search

compomics / peptide-shaker

Interpretation of proteomics identification results
http://compomics.github.io/projects/peptide-shaker.html
47 stars 19 forks source link

public data not found in PRIDE reshake #456

Closed aelezi01 closed 3 years ago

aelezi01 commented 3 years ago

Hi, I am trying to access the data from the Tirloni paper with the accession number PXD018964. This dataset was recently released to public access on the PRIDE repository, but I cannot find it on PRIDE reshaker when filtering "PRIDE projects".

My current version on Peptide Shaker is 2.0.25

hbarsnes commented 3 years ago

I'm afraid that the PRIDE Reshake option is not currently working after the PRIDE web service was updated a while back. I'm not sure when we will get the chance to update our code. In the meantime, I would recommend manually finding and downloading the wanted dataset directly from PRIDE (https://www.ebi.ac.uk/pride) and then processing them separately in SearchGUI/PeptideShaker.

aelezi01 commented 3 years ago

Will do that then. Thank you!