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compomics / peptide-shaker

Interpretation of proteomics identification results
http://compomics.github.io/projects/peptide-shaker.html
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An error occurred: Not enough representative modification sites found. #517

Closed danyunghsu closed 10 months ago

danyunghsu commented 1 year ago

Hi, I'm running a searchGUI file processed in msgf in peptideshaker, and i recieve this message "An error occurred: Not enough representative modification sites found". I find a same question #Importing data cancelled. Processing failed. Not enough representative PTM sites found #80# but i'm now using the 2.2.22 version of peptideshaker. How do i resolve this problem? Thanks, Danyung 5_msgfQ.txt

hbarsnes commented 1 year ago

Hi Danyung,

We are working on a fix for this issue and a new version should soon be available for testing. We'll let you know as soon as the new release is available.

Best regards, Harald

danyunghsu commented 1 year ago

Alright, thank you for clarifying me! I'll wait for the new version then :)

hbarsnes commented 1 year ago

A beta version that should fix this issue is now available for testing here: https://genesis.ugent.be/maven2/eu/isas/peptideshaker/PeptideShaker/3.0.0-beta/PeptideShaker-3.0.0-beta.zip

Note that you will have to reprocess the data in PeptideShaker, i.e. you cannot open old PeptideShaker projects directly.

Please let us know if this new version solves the modification issues you were experiencing?

danyunghsu commented 10 months ago

Hi Harald, I tested the same data using this new version, problem fixed. Thank you for your prompt solution. Danyung