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compomics / psm_utils

Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
https://psm-utils.readthedocs.io
Apache License 2.0
24 stars 6 forks source link

Add ionbot reader; read ion mobility from mzid files #43

Closed ArthurDeclercq closed 12 months ago

ArthurDeclercq commented 1 year ago

Added

Changed

codecov-commenter commented 1 year ago

Codecov Report

Patch coverage: 40.29% and project coverage change: -0.26% :warning:

Comparison is base (e2cb5d4) 58.48% compared to head (0b96576) 58.22%.

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #43 +/- ## ========================================== - Coverage 58.48% 58.22% -0.26% ========================================== Files 21 22 +1 Lines 2045 2097 +52 ========================================== + Hits 1196 1221 +25 - Misses 849 876 +27 ``` | [Files Changed](https://app.codecov.io/gh/compomics/psm_utils/pull/43?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics) | Coverage Δ | | |---|---|---| | [psm\_utils/io/mzid.py](https://app.codecov.io/gh/compomics/psm_utils/pull/43?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics#diff-cHNtX3V0aWxzL2lvL216aWQucHk=) | `30.79% <19.04%> (+0.05%)` | :arrow_up: | | [psm\_utils/io/ionbot.py](https://app.codecov.io/gh/compomics/psm_utils/pull/43?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics#diff-cHNtX3V0aWxzL2lvL2lvbmJvdC5weQ==) | `48.78% <48.78%> (ø)` | | | [psm\_utils/psm.py](https://app.codecov.io/gh/compomics/psm_utils/pull/43?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics#diff-cHNtX3V0aWxzL3BzbS5weQ==) | `82.60% <50.00%> (-3.11%)` | :arrow_down: | | [psm\_utils/io/\_\_init\_\_.py](https://app.codecov.io/gh/compomics/psm_utils/pull/43?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics#diff-cHNtX3V0aWxzL2lvL19faW5pdF9fLnB5) | `35.95% <100.00%> (+0.72%)` | :arrow_up: |

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ArthurDeclercq commented 12 months ago

Changed the requested changes