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compomics / psm_utils

Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
https://psm-utils.readthedocs.io
Apache License 2.0
24 stars 6 forks source link

Feature: Add PepXMLReader #54

Closed RalfG closed 10 months ago

RalfG commented 10 months ago

Added

Fixed

codecov-commenter commented 10 months ago

Codecov Report

Attention: 20 lines in your changes are missing coverage. Please review.

Comparison is base (ee39fd2) 58.26% compared to head (0aa5990) 58.49%.

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #54 +/- ## ========================================== + Coverage 58.26% 58.49% +0.23% ========================================== Files 22 23 +1 Lines 2106 2159 +53 ========================================== + Hits 1227 1263 +36 - Misses 879 896 +17 ``` | [Files](https://app.codecov.io/gh/compomics/psm_utils/pull/54?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics) | Coverage Δ | | |---|---|---| | [psm\_utils/\_\_init\_\_.py](https://app.codecov.io/gh/compomics/psm_utils/pull/54?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics#diff-cHNtX3V0aWxzL19faW5pdF9fLnB5) | `100.00% <100.00%> (ø)` | | | [psm\_utils/io/\_\_init\_\_.py](https://app.codecov.io/gh/compomics/psm_utils/pull/54?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics#diff-cHNtX3V0aWxzL2lvL19faW5pdF9fLnB5) | `36.66% <100.00%> (+0.71%)` | :arrow_up: | | [psm\_utils/io/pepxml.py](https://app.codecov.io/gh/compomics/psm_utils/pull/54?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics#diff-cHNtX3V0aWxzL2lvL3BlcHhtbC5weQ==) | `61.53% <61.53%> (ø)` | | ... and [1 file with indirect coverage changes](https://app.codecov.io/gh/compomics/psm_utils/pull/54/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics)

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