Question: How to deal with percolator output (xml)

compomics / psm_utils

Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

https://psm-utils.readthedocs.io

Apache License 2.0

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Question: How to deal with percolator output (xml) #65

Closed JannikSchneider12 closed 7 months ago

JannikSchneider12 commented 8 months ago

Hey,

I wanted to read in my output file from percolator. However I am not sure how to do this since the function from psm_utils (psm_utils.io.percolator.PercolatorTabReader) seems to need a tsv file right? But percolator outputs a xml file.

Thanks for your time and help