Open RalfG opened 5 months ago
A concrete use case this happens is with Mascot search results. For example, this mzIdentML snippet is from exporting results of a search against SwissProt: <Peptide id="peptide_28284_10"> <PeptideSequence>APLLVPGFCVAXNQPTMR</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam accession="UNIMOD:214" name="iTRAQ4plex" cvRef="UNIMOD" /> </Modification> <Modification location="9" residues="C" monoisotopicMassDelta="45.987721"> <cvParam accession="UNIMOD:39" name="Methylthio" cvRef="UNIMOD" /> </Modification> <SubstitutionModification location="12" originalResidue="X" replacementResidue="A" /> </Peptide>
A concrete use case this happens is with Mascot search results. For example, this mzIdentML snippet is from exporting results of a search against SwissProt:
<Peptide id="peptide_28284_10"> <PeptideSequence>APLLVPGFCVAXNQPTMR</PeptideSequence> <Modification location="0" monoisotopicMassDelta="144.102063"> <cvParam accession="UNIMOD:214" name="iTRAQ4plex" cvRef="UNIMOD" /> </Modification> <Modification location="9" residues="C" monoisotopicMassDelta="45.987721"> <cvParam accession="UNIMOD:39" name="Methylthio" cvRef="UNIMOD" /> </Modification> <SubstitutionModification location="12" originalResidue="X" replacementResidue="A" /> </Peptide>
Originally posted by @vrkosk in https://github.com/compomics/ms2rescore/issues/106#issuecomment-2014909164
Originally posted by @vrkosk in https://github.com/compomics/ms2rescore/issues/106#issuecomment-2014909164