codecov[bot]
commented
4 months ago Codecov Report
Attention: Patch coverage is 83.96226% with 17 lines in your changes are missing coverage. Please review.
Project coverage is 64.19%. Comparing base (
2973b67) to head (6a8b51f).
| Files | Patch % | Lines |
|---|---|---|
| psm_utils/io/proteoscape.py | 37.50% | 10 Missing :warning: |
| psm_utils/io/parquet.py | 94.64% | 3 Missing :warning: |
| psm_utils/io/__init__.py | 50.00% | 2 Missing :warning: |
| psm_utils/io/sage.py | 92.30% | 2 Missing :warning: |
Additional details and impacted files
```diff @@ Coverage Diff @@ ## main #81 +/- ## ========================================== + Coverage 63.27% 64.19% +0.91% ========================================== Files 25 26 +1 Lines 2421 2497 +76 ========================================== + Hits 1532 1603 +71 - Misses 889 894 +5 ``` | [Flag](https://app.codecov.io/gh/compomics/psm_utils/pull/81/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/compomics/psm_utils/pull/81/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics) | `64.19% <83.96%> (+0.91%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics#carryforward-flags-in-the-pull-request-comment) to find out more.:umbrella: View full report in Codecov by Sentry.
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Added
io: Read and write support for writing PSMs to Apache Parquet for efficient storage of PSM lists.io.sage: Support for Sage results in Parquet format (newSageParquetReader, renamedSageReadertoSageTSVReader).Changed
spectrum_idfield is now always coerced to a string.io.proteoscape: Use PyArrow to iteratively read from Parquet instead of first reading an entire dataframe with Pandas.io.sage: Update compatibility to Sage v0.14