compomics / psm_utils

Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
https://psm-utils.readthedocs.io
Apache License 2.0
24 stars 6 forks source link

comet support #87

Closed paretje closed 2 months ago

paretje commented 2 months ago

Fix support for Comet generated pepXML and mzID files.

Closes: #86

codecov[bot] commented 2 months ago

Codecov Report

Attention: Patch coverage is 0% with 5 lines in your changes missing coverage. Please review.

Project coverage is 64.73%. Comparing base (871bf43) to head (e711510).

Files Patch % Lines
psm_utils/io/mzid.py 0.00% 3 Missing :warning:
psm_utils/io/pepxml.py 0.00% 2 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #87 +/- ## ========================================== - Coverage 64.81% 64.73% -0.08% ========================================== Files 26 26 Lines 2498 2501 +3 ========================================== Hits 1619 1619 - Misses 879 882 +3 ``` | [Flag](https://app.codecov.io/gh/compomics/psm_utils/pull/87/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/compomics/psm_utils/pull/87/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics) | `64.73% <0.00%> (-0.08%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=compomics#carryforward-flags-in-the-pull-request-comment) to find out more.

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