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compomics / searchgui

Highly adaptable common interface for proteomics search and de novo engines
http://compomics.github.io/projects/searchgui.html
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parameters file not generated #352

Closed esraaelmligy closed 1 year ago

esraaelmligy commented 1 year ago

I am trying to run the IdentificationParametersCLI from searchgui to generate my parameters file, but after the code execution it neither generate the file in the specified path nor gives me an error, please tell me why i would be facing such an issue

Code: java -cp SearchGUI-4.2.9.jar eu.isas.searchgui.cmd.IdentificationParametersCLI -out /home/esraa/work/DB_search/id_out.par

parameters:

-frag_tol 0.05

-max_charge 6

-fixed_mods "Carbamidomethylation of C, ITRAQ-4Plex of K, ITRAQ-4Plex of Ntermini"

-variable_mods "Oxidation of M, ITRAQ-4Plex of Y"

-xtandem_quick_acetyl 0

-xtandem_quick_pyro 0

-xtandem_evalue 100

esraaelmligy commented 1 year ago

After previewing the log file it seemed that i had a missing java library so i re-installed java using sudo-apt install and it worked