Myrimatch pepXML output

[GoogleCodeExporter]

> What steps will reproduce the problem?
SearchGUI exports the Myrimatch output results in the mzIdentML format by 
default.

> What is the expected output? What do you see instead?
Myrimatch also supports exporting to the pepXML format. Allow the user the 
choice between both output formats (cfr. OMSSA, Tide).

> What version of the product are you using? On what operating system?
SearchGUI 1.26.3

Original issue reported on code.google.com by bittremi...@gmail.com on 6 Mar 2015 at 12:26

[GoogleCodeExporter]

Support for pepXML export from MyriMatch has now been added and will be 
included in the next SearchGUI release.

Original comment by harald.b...@gmail.com on 6 Mar 2015 at 1:40

• Changed state: Fixed

[GoogleCodeExporter]

I think you might possibly have forgotten a negation operator in the latest 
code change.

https://code.google.com/p/compomics-utilities/source/diff?spec=svn1680&r=1680&fo
rmat=side&path=/trunk/src/main/java/com/compomics/util/experiment/identification
/identification_parameters/MyriMatchParameters.java

Line 170 should return false if the two are _not_ equal I guess.

Original comment by bittremi...@gmail.com on 6 Mar 2015 at 2:12

[GoogleCodeExporter]

Ah, yes. Thanks. Fixed.

Original comment by harald.b...@gmail.com on 6 Mar 2015 at 2:18