Module Not Found Error: import in call_modification_frequency.py

comprna / METEORE

Automatic DNA methylation detection from nanopore tools and their consensus model

MIT License

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Module Not Found Error: import in call_modification_frequency.py #2

Closed ViHammer closed 3 years ago

ViHammer commented 3 years ago

I am currently trying to run your 'call_modification_frequency.py' script on deepsignal data I have. This is the error message it produces:

Traceback (most recent call last):
  File "call_modification_frequency.py", line 10, in <module>
    from txt_formater import ModRecord
ModuleNotFoundError: No module named 'txt_formater'

I cannot find any module with this name online.

Thanks in advance!

zakayuen commented 3 years ago

Hi,

What command did you use to run this script? Please also check if there is a file called txt_formater.py under the script_in_snakemake directory so that you can import the ModRecord submodule from the txt_formater module.

Zaka

ViHammer commented 3 years ago

Hi, I tried running the script independently from your pipeline and forgot to move the txt_formater.py file with my script. It works now!