comprna / RATTLE

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
GNU General Public License v3.0
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Failed cluster extraction on the server #55

Open officialnaturalist opened 1 month ago

officialnaturalist commented 1 month ago

Hi,

I keep getting this error running rattle -extract_cluster: ./rattle: /lib64/libm.so.6: versionGLIBC_2.29' not found (required by ./rattle) ./rattle: /lib64/libstdc++.so.6: version GLIBCXX_3.4.26' not found (required by ./rattle

However, since I'm running it on a university cluster, I do not have sudo privileges and cannot update GLIBC and GLIBCXX. I tried downloading newer versions through conda to no avail, unfortunately. Particularly the libm.so.6 version. Do you know how to resolve this issue?

P.S. I downloaded rattle through the zipped software file and unzipped it and built it (the git clone command wasn't working for me)

Thanks!

EduEyras commented 1 month ago

Hi Can you request admin to update it for you? Best E.

On Fri, 23 Aug 2024 at 11:45, officialnaturalist @.***> wrote:

Hi,

I keep getting this error running rattle -extract_cluster: ./rattle: /lib64/libm.so.6: version GLIBC_2.29' not found (required by ./rattle) ./rattle: /lib64/libstdc++.so.6: version GLIBCXX_3.4.26' not found (required by ./rattle

However, since I'm running it on a university cluster, I do not have sudo privileges and cannot update GLIBC and GLIBCXX. I tried downloading newer versions through conda to no avail, unfortunately. Particularly the libm.so.6 version. Do you know how to resolve this issue?

P.S. I downloaded rattle through the zipped software file and unzipped it and built it (the git clone command wasn't working for me)

Thanks!

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