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comprna / SUPPA

SUPPA: Fast quantification of splicing and differential splicing
MIT License
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cryptic exon #169

Closed rezarahman12 closed 9 months ago

rezarahman12 commented 9 months ago

Hello SUPPA developer,

I'm just wondering whether SUPPA2 can be used for the identification of cryptic exons from RNA-seq, if so, may you please shed some light on the approach to detect cryptic exons?

Thank you for your consideration.

Best regards Reza

EduEyras commented 9 months ago

Hi Reza,

Thanks for your email.

SUPPA uses a GTF with an annotation to build the events. So it cannot describe cryptic exons unless you add them in the GTF somehow.

I hope this helps

Eduardo

On Sun, 27 Aug 2023 at 20:56, rezarahman12 @.***> wrote:

Hello SUPPA developer,

I'm just wondering whether SUPPA2 can be used for the identification of cryptic exons from RNA-seq, if so, may you please shed some light on the approach to detect cryptic exons?

Thank you for your consideration.

Best regards Reza

— Reply to this email directly, view it on GitHub https://github.com/comprna/SUPPA/issues/169, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADCZKB35RAAIC2YTRBTV4WDXXMRVNANCNFSM6AAAAAA4AHM7NU . You are receiving this because you are subscribed to this thread.Message ID: @.***>

rezarahman12 commented 9 months ago

Thanks, Eduardo!