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comprna / SUPPA

SUPPA: Fast quantification of splicing and differential splicing
MIT License
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Can't find inclusion_transcripts in ioe file #200

Closed mianlee closed 7 hours ago

mianlee commented 1 week ago

Dear author :

When tried to generate ioe file, for the header of ioe file, I didn't find inclusion_transcripts , instead it is alternative_transcripts? Did I do wrong?

Best Mian

EduEyras commented 1 week ago

Hi The iow file should have a column for the transcripts that include the exon (or exon fragment) and a column that includes all transcripts that include or skip the exon (with the specific intron boundary constraints). Does this answer your question? E

On Thu, 14 Nov 2024 at 14:13, Mian Li @.***> wrote:

Dear author :

When tried to generate ioe file, for the header of ioe file, I didn't find inclusion_transcripts , instead it is alternative_transcripts? Did I do wrong?

Best Mian

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