comprna / SUPPA

SUPPA: Fast quantification of splicing and differential splicing
MIT License
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I do have the same issue when I use choose classical method, I replaced the diff_tools.py file from repository, which has nan_th argument definition at line 532. My previous diff_tools.py file which was from conda installation, doesn't mention about this argument at line 532. But even after replacing the diff_tools.py file from the repository, the same error is still passed. #94

Open jaganmskcc opened 4 years ago

jaganmskcc commented 4 years ago

I do have the same issue when I use choose classical method, I replaced the diff_tools.py file from repository, which has nan_th argument definition at line 532. My previous diff_tools.py file which was from conda installation, doesn't mention about this argument at line 532. But even after replacing the diff_tools.py file from the repository, the same error is still passed.

Originally posted by @jaganmskcc in https://github.com/comprna/SUPPA/issues/32#issuecomment-667412316

EduEyras commented 4 years ago

Hi, this seems to have been fixed in the master. It might not have been updated in the conda installation. Have you tried with the master version of the code?

E.

On Sat, 1 Aug 2020 at 08:29, jaganmskcc notifications@github.com wrote:

I do have the same issue when I use choose classical method, I replaced the diff_tools.py file from repository, which has nan_th argument definition at line 532. My previous diff_tools.py file which was from conda installation, doesn't mention about this argument at line 532. But even after replacing the diff_tools.py file from the repository, the same error is still passed.

Originally posted by @jaganmskcc https://github.com/jaganmskcc in #32 (comment) https://github.com/comprna/SUPPA/issues/32#issuecomment-667412316

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/comprna/SUPPA/issues/94, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADCZKBYXUKIRETGTD4CXBZDR6NAV3ANCNFSM4PQ77XTA .

-- Prof. E Eyras EMBL Australia Group Leader The John Curtin School of Medical Research - Australian National University https://github.com/comprna http://scholar.google.com/citations?user=LiojlGoAAAAJ

EduEyras commented 4 years ago

Do your nan's appear as "nan" in the file?

Please send me some examples of your files so that I can run the command and test it (eduardo.eyras at anu.edu.au)

Thanks

E.

On Sat, 1 Aug 2020 at 08:29, jaganmskcc notifications@github.com wrote:

I do have the same issue when I use choose classical method, I replaced the diff_tools.py file from repository, which has nan_th argument definition at line 532. My previous diff_tools.py file which was from conda installation, doesn't mention about this argument at line 532. But even after replacing the diff_tools.py file from the repository, the same error is still passed.

Originally posted by @jaganmskcc https://github.com/jaganmskcc in #32 (comment) https://github.com/comprna/SUPPA/issues/32#issuecomment-667412316

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/comprna/SUPPA/issues/94, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADCZKBYXUKIRETGTD4CXBZDR6NAV3ANCNFSM4PQ77XTA .

-- Prof. E Eyras EMBL Australia Group Leader The John Curtin School of Medical Research - Australian National University https://github.com/comprna http://scholar.google.com/citations?user=LiojlGoAAAAJ