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computational-cell-analytics / micro-sam

Segment Anything for Microscopy
https://computational-cell-analytics.github.io/micro-sam/
MIT License
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Add out of domain test datasets for benchmarking finetuned models #719

Closed anwai98 closed 4 days ago

anwai98 commented 2 weeks ago

The idea for this would be to have scripts unified in one place for evaluating automatic and interactive segmentation capabilities of micro-sam on a diverse set of open-source datasets (i.e. download them, preprocess them, run inference with new finetuned models and generate relevant metric scores) (ideally, we would like to support inference in both 2d and 3d - wherever relevant).

anwai98 commented 4 days ago

This is resolved by https://github.com/computational-cell-analytics/micro-sam/pull/728.