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computational-metabolomics
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structToolbox
R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox
https://computational-metabolomics.github.io/structToolbox/
GNU General Public License v3.0
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Error occurs when plotting PLS feature importance
#67
Chuan-Jiang
opened
9 months ago
2
[BUG] default predicted slot for tSNE is set to a slot that doesnt exist
#66
grlloyd
opened
1 year ago
0
Possibilities to plot 3d PCA ?
#65
oolonek
closed
1 year ago
1
PLS updates
#64
grlloyd
closed
2 years ago
0
update to new ontology system
#63
grlloyd
closed
3 years ago
0
HSD parameter "unbalanced" never gets used
#62
grlloyd
opened
3 years ago
0
add fold change using mean (addresses #57)
#61
grlloyd
closed
3 years ago
0
add option to plot points connected by line
#60
grlloyd
closed
3 years ago
0
fix for #56
#59
grlloyd
closed
3 years ago
0
add `outputs` to auto generated documentation
#58
grlloyd
closed
3 years ago
0
add "mean" method for calculating fold change
#57
grlloyd
closed
3 years ago
1
the threshold for fold change using "median" isnt applied correctly
#56
grlloyd
closed
3 years ago
1
the alpha parameter for fold change isnt used
#55
grlloyd
closed
3 years ago
1
provide documentation for struct object outputs
#54
grlloyd
closed
3 years ago
1
Fix paired ttest
#53
grlloyd
closed
3 years ago
0
fix paired tests
#52
grlloyd
closed
3 years ago
0
report reasons for NA in ANOVA / ttest
#51
grlloyd
opened
3 years ago
0
Merge dev branch for bioc 3.13
#50
grlloyd
closed
3 years ago
0
Feature sbc spar limits
#49
grlloyd
closed
3 years ago
0
update pqn due to changes in pmp
#48
grlloyd
closed
3 years ago
0
add tic chart
#47
grlloyd
closed
3 years ago
0
Release 1.2.1
#46
grlloyd
closed
3 years ago
0
Add GitHub actions
#45
grlloyd
closed
3 years ago
0
merge bioc 3.12 release into dev
#44
grlloyd
closed
3 years ago
0
PLS model is reporting coefficients for the last component only
#43
grlloyd
closed
3 years ago
1
ask user to install missing packages when object is created
#42
grlloyd
opened
3 years ago
0
add PLS scores plot for regression models
#41
grlloyd
opened
3 years ago
1
add selectivity ratio as an output for PLS objects
#40
grlloyd
opened
3 years ago
0
add option to use 'equal variance' in ttest
#39
grlloyd
closed
3 years ago
1
report number of features used to compute the median for PQN
#38
grlloyd
closed
3 years ago
2
add details of pqn calculation to description
#37
grlloyd
closed
3 years ago
2
RSD filter incorrectly states it removes feature below the threshold
#36
grlloyd
closed
3 years ago
1
merge bioc 3.12 release into dev
#35
grlloyd
closed
3 years ago
0
fold_change output params have no column names
#34
grlloyd
closed
3 years ago
0
pqn factor_name has no description
#33
grlloyd
closed
3 years ago
1
Release 3 12 candidate
#32
grlloyd
closed
3 years ago
0
Feature documentation 3 12
#31
grlloyd
closed
3 years ago
0
Feature documentation 3 12
#30
grlloyd
closed
3 years ago
0
Update mean_of_medians.R
#29
grlloyd
closed
3 years ago
0
mean of medians not working correctly
#28
grlloyd
closed
3 years ago
0
Issue 23 filter by name
#27
grlloyd
closed
3 years ago
0
Feature non parametric fold change
#26
grlloyd
closed
3 years ago
0
make d-statistic/hotelling T2 a model object so that it can be used for filtering
#25
grlloyd
opened
3 years ago
0
allow user to set lambda
#24
grlloyd
closed
3 years ago
0
filter_by_name doesn't work with model_train
#23
grlloyd
closed
3 years ago
0
fix for issue #9
#22
grlloyd
closed
3 years ago
0
Issue 17 ttest factor
#21
grlloyd
closed
3 years ago
0
fix for https://github.com/computational-metabolomics/structToolbox/i…
#20
grlloyd
closed
4 years ago
0
merge bug fix 1.01 into dev
#19
grlloyd
closed
4 years ago
0
fold change uses control group in the numerator
#18
grlloyd
closed
3 years ago
2
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