unable to run the code, facing the following issue

[naveenkarnam]

Dear CAPG Team I have executed code as per readme file but landing with following errors. Could you please help me identify the issue and execute the code.

libdc1394 error: Failed to initialize libdc1394 [2021-01-08 11:59:38.943939] INFO: sigr: Args: {'adabn': False, 'amplitude_weighting': False, 'balance_gesture': 1.0, 'bandstop': False, 'batch_size': 1000, 'bng': False, 'confuse_all': False, 'confuse_conv': False, 'conv_shortcut': False, 'crossval_type': 'universal-one-fold-intra-subject', 'dataset': 'ninapro-db1', 'decay_all': True, 'dense_window': True, 'downsample': 0, 'drop_branch': False, 'drop_conv': False, 'drop_pixel': (-1,), 'drop_presnet': False, 'drop_presnet_branch': False, 'drop_presnet_proj': False, 'dropout': 0.5, 'dual_stream': False, 'fast_pixel_reduce': True, 'faug': 0.0, 'faug_classwise': False, 'fft': False, 'fft_append': False, 'fix_params': (), 'fold': 0, 'gamma': 10.0, 'gpu': (0,), 'gpu_x': 0, 'ignore_params': (), 'lambda_scale': 1.0, 'log': '.cache/srep-ninapro-db1-universal-one-fold-intra-subject/log', 'lr': 0.1, 'lr_factor': (), 'lr_step': (16, 24), 'lstm': False, 'lstm_bn': True, 'lstm_dropout': 0.0, 'lstm_grad_scale': True, 'lstm_last': 0, 'lstm_shortcut': False, 'lstm_window': None, 'minibatch': False, 'module': 'convnet', 'num_adabn_epoch': 1, 'num_bottleneck': 128, 'num_conv': 2, 'num_epoch': 28, 'num_eval_epoch': 1, 'num_feature_block': 2, 'num_filter': 64, 'num_gesture_block': 0, 'num_hidden': 512, 'num_lstm_hidden': 128, 'num_lstm_layer': 1, 'num_pixel': 2, 'num_pixel_reduce_filter': (None, None), 'num_presnet': (), 'num_revgrad_batch': 2, 'num_semg_col': 10, 'num_semg_row': 1, 'num_subject_block': 0, 'num_tzeng_batch': 2, 'params': None, 'pixel_reduce_bias': False, 'pixel_reduce_kernel': (1, 1), 'pixel_reduce_loss_weight': 0.0, 'pixel_reduce_norm': False, 'pixel_reduce_pad': (0, 0), 'pixel_reduce_reg_out': False, 'pixel_reduce_stride': (1, 1), 'pixel_same_init': False, 'pool': False, 'preprocess': NinaProLowpass(), 'presnet_branch': (), 'presnet_dense': False, 'presnet_proj_type': 'A', 'presnet_promote': False, 'random_bad_channel': (), 'random_scale': 0.0, 'random_shift_fill': 'zero', 'random_shift_horizontal': 0, 'random_shift_vertical': 0, 'revgrad': False, 'root': '.cache/srep-ninapro-db1-universal-one-fold-intra-subject', 'snapshot': '.cache/srep-ninapro-db1-universal-one-fold-intra-subject/model', 'snapshot_period': 28, 'subject_confusion_loss_weight': 1.0, 'subject_loss_weight': 1.0, 'subject_wd': None, 'tzeng': False, 'wd': 0.0001, 'window': 1, 'zscore': True, 'zscore_bng': False} Traceback (most recent call last): File "/usr/lib/python2.7/runpy.py", line 162, in _run_module_as_main "main", fname, loader, pkg_name) File "/usr/lib/python2.7/runpy.py", line 72, in _run_code exec code in run_globals File "/code/sigr/app.py", line 752, in cli(obj=Bunch()) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 716, in call return self.main(args, kwargs) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 696, in main rv = self.invoke(ctx) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 1060, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 1060, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 889, in invoke return ctx.invoke(self.callback, ctx.params) File "/usr/local/lib/python2.7/dist-packages/click/core.py", line 534, in invoke return callback(args, kwargs) File "/usr/local/lib/python2.7/dist-packages/click/decorators.py", line 27, in new_func return f(get_current_context().obj, args, kwargs) File "sigr/utils/init.py", line 101, in wrapped return func(ctx_or_args, kargs) File "/code/sigr/app.py", line 186, in crossval random_shift_vertical=args.random_shift_vertical File "sigr/data/init.py", line 236, in get_universal_one_fold_intra_subject_data shuffle=True) File "sigr/data/init.py", line 325, in get_data trial = get_trial(root=root, combo=combo) File "sigr/data/ninapro/init.py", line 68, in call zip(paths, _get_data(paths, self.preprocess))}) File "/usr/local/lib/python2.7/dist-packages/joblib/memory.py", line 483, in call return self._cached_call(args, kwargs)[0] File "/usr/local/lib/python2.7/dist-packages/joblib/memory.py", line 430, in _cached_call out, metadata = self.call(args, kwargs) File "/usr/local/lib/python2.7/dist-packages/joblib/memory.py", line 675, in call output = self.func(*args, kwargs) File "sigr/data/ninapro/init.py", line 80, in _get_data return [_get_data_aux(path, preprocess) for path in paths] File "sigr/data/ninapro/init.py", line 84, in _get_data_aux data = sio.loadmat(path)['data'].astype(np.float32) File "/usr/lib/python2.7/dist-packages/scipy/io/matlab/mio.py", line 125, in loadmat MR = mat_reader_factory(file_name, appendmat, kwargs) File "/usr/lib/python2.7/dist-packages/scipy/io/matlab/mio.py", line 54, in mat_reader_factory byte_stream = _open_file(file_name, appendmat) File "/usr/lib/python2.7/dist-packages/scipy/io/matlab/mio.py", line 28, in _open_file raise IOError(e) IOError: [Errno 2] No such file or directory: '/code/.cache/ninapro-db1/data/000/001/000_001_000.mat' libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist. libdc1394 error: Failed to initialize libdc1394 Usage: app.py exp [OPTIONS] COMMAND [ARGS]...

Error: Invalid value for "--params": Path ".cache/srep-ninapro-db1-universal-one-fold-intra-subject/model-0028.params" does not exist.

[peekaboo-xu]

Hello,have you solved the above problems ?

[peekaboo-xu]

I now encounter such problems. Does this feature extraction need to be processed by matlab ? How did you solve it？

NinaPro feature map generation, use window = 20 frames, stride = 1 frames joblib.externals.loky.process_executor._RemoteTraceback: """ Traceback (most recent call last): File "/home/server419/miniconda3/envs/xtt/lib/python3.6/site-packages/scipy/io/matlab/mio.py", line 39, in _open_file return open(file_like, mode), True FileNotFoundError: [Errno 2] No such file or directory: 'D:/SEMG/mvcnn/sigr/data/ninapro-db2/data/000/000/000_000_000.mat'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/server419/miniconda3/envs/xtt/lib/python3.6/site-packages/joblib/externals/loky/process_executor.py", line 436, in _proces s_worker r = call_item() File "/home/server419/miniconda3/envs/xtt/lib/python3.6/site-packages/joblib/externals/loky/process_executor.py", line 288, in call return self.fn(*self.args, **self.kwargs) File "/home/server419/miniconda3/envs/xtt/lib/python3.6/site-packages/joblib/_parallel_backends.py", line 595, in call return self.func(*args, **kwargs) File "/home/server419/miniconda3/envs/xtt/lib/python3.6/site-packages/joblib/parallel.py", line 263, in call__ for func, args, kwargs in self.items] File "/home/server419/miniconda3/envs/xtt/lib/python3.6/site-packages/joblib/parallel.py", line 263, in for func, args, kwargs in self.items] File "NINAPRODB2-feature-extraction.py", line 177, in emg_feature_extraction_parallel_2 data = sio.loadmat(in_path)['data'].astype(np.float32) File "/home/server419/miniconda3/envs/xtt/lib/python3.6/site-packages/scipy/io/matlab/mio.py", line 222, in loadmat with _open_file_context(file_name, appendmat) as f: File "/home/server419/miniconda3/envs/xtt/lib/python3.6/contextlib.py", line 81, in enter return next(self.gen) File "/home/server419/miniconda3/envs/xtt/lib/python3.6/site-packages/scipy/io/matlab/mio.py", line 17, in _open_file_context f, opened = _open_file(file_like, appendmat, mode) File "/home/server419/miniconda3/envs/xtt/lib/python3.6/site-packages/scipy/io/matlab/mio.py", line 45, in _open_file return open(file_like, mode), True FileNotFoundError: [Errno 2] No such file or directory: 'D:/SEMG/mvcnn/sigr/data/ninapro-db2/data/000/000/000_000_000.mat' """

The above exception was the direct cause of the following exception:

Traceback (most recent call last): File "NINAPRODB2-feature-extraction.py", line 233, in Parallel(n_jobs=8)(delayed(emg_feature_extraction_parallel_2)(input_path, output_path, combo, feature_list) for combo in combos) File "/home/server419/miniconda3/envs/xtt/lib/python3.6/site-packages/joblib/parallel.py", line 1056, in call self.retrieve() File "/home/server419/miniconda3/envs/xtt/lib/python3.6/site-packages/joblib/parallel.py", line 935, in retrieve self._output.extend(job.get(timeout=self.timeout)) File "/home/server419/miniconda3/envs/xtt/lib/python3.6/site-packages/joblib/_parallel_backends.py", line 542, in wrap_future_result return future.result(timeout=timeout) File "/home/server419/miniconda3/envs/xtt/lib/python3.6/concurrent/futures/_base.py", line 432, in result return self.get_result() File "/home/server419/miniconda3/envs/xtt/lib/python3.6/concurrent/futures/_base.py", line 384, in get_result raise self._exception FileNotFoundError: [Errno 2] No such file or directory: 'D:/SEMG/mvcnn/sigr/data/ninapro-db2/data/000/000/000_000_000.mat'

[naveenkarnam]

No i couldn't solve the issue