Failed to generate bibliography

[williamlorder]

Thank you for making such an excellent template, however I found that the examples did not work with bibliography...

[WARNING] Could not highlight code block:
  Capture 2 not defined!
ERROR: Failed to generate bibliography, rendering failed with code 1
pandoc: /Users/zekai/Desktop/ed/Users/zekai/Desktop/ed/references.bib: openBinaryFile: does not exist (No such file or directory)

This is the original setup

title: "Computo Journal Format"
subtitle: "To be used as template for contribution to Computo"
date: last-modified
author:
  - name: The Computo Team
    corresponding: true
    email: computo@sfds.asso.fr
    url: https://computo.sfds.asso.fr
    orcid: 0000-0000-0000-0000
    affiliations:
      - name: Société Française de Statistique
        department: Statistique
        address: IHP
        city: Paris
        country: France
        postal-code: 75005
  - name: a friend
    affiliations:
      - Another Affiliation
description: |
  This document provides a template based on the quarto system for contributions to Computo. The github repository in itself provides a specific quarto extension useful for authors (and editors!).
abstract: |
  This is the abstract - Lorem ipsum dolor sit amet, consectetur adipiscing elit. Curabitur posuere vestibulum facilisis. Aenean pretium orci augue, quis lobortis libero accumsan eu. Nam mollis lorem sit amet pellentesque ullamcorper. Curabitur lobortis libero eget malesuada vestibulum. Nam nec nibh massa. Pellentesque porttitor cursus tellus. Mauris urna erat, rhoncus sed faucibus sit amet, venenatis eu ipsum.
keywords: [template, quarto, R, Python, reproductibility]
doi: 10.xxxx/xxx-xxx
citation:
  type: article-journal
  container-title: "Computo"
  doi: "10.xxxx/xxx-xxx"
  url: "https://github.com/computorg/computo-quarto-extension"
  issn: "2824-7795"
bibliography: references.bib
google-scholar: true
github-user: computorg
repo: "computo-quarto-extension"
draft: true # set to false once the build is running
published: false # will be set to true once accepted
format:
  computo-html: default
  computo-pdf: default

[fradav]

I guess this a bug with quarto: https://github.com/quarto-dev/quarto-cli/issues/2851 Fixed with v1.2.215

@jchiquet we should mention it in the README something like: Quarto itself is a work-in-progress and a lot of bugs are constantly fixed or features added. As such, we recommend:

• searching any encountered issue with renders in the upstream quarto dev repo https://github.com/quarto-dev/quarto-cli/issues
• using the latest preview version of quarto in https://github.com/quarto-dev/quarto-cli/releases

[williamlorder]

Well,The problem was solved after updating to the lastest version.However, another issue arose when I render with my own bibliography file... That file was automatically generated from Zotero plugin Better Bibtex. Here is the error.

ERROR: TypeError: Cannot read properties of undefined (reading 'map')

and this is my setup.

---
title: "A tremendous shock? — Understanding the secondary social impact of COVID-19 of people with disabilitie"
subtitle: "the secondary social impact of people with disabilities"
date: last-modified
author:
  - name: Zekai Lu
    corresponding: true
    email: 1903500028@e.gzhu.edu.cn
    url: https://computo.sfds.asso.fr
    orcid: 0000-0000-0000-0000
    affiliations: 
      - id: GZHU
        name: Guangzhou University
        department: Sociology
        address: No.230 Waihuanxi Lu
        city: Guangzhou
        state: Guangdong
        postal-code: 510440
description: |
  This document provides a template based on the quarto system for contributions to Computo. The github repository in itself provides a specific quarto extension useful for authors (and editors!).
keywords: [people with disabilities, COVID-19, secondary social impact, Intersectionality perspective, the ICF Framework]
doi: 10.xxxx/xxx-xxx
# citation:
#   type: article-journal
#   container-title: "Computo"
#   doi: "10.xxxx/xxx-xxx"
#   url: "https://github.com/computorg/computo-quarto-extension"
#   issn: "2824-7795"
google-scholar: true
github-user: computorg
repo: "computo-quarto-extension"
draft: true # set to false once the build is running
published: false # will be set to true once accepted
bibliography: "references.bib"
filters: 
  - "/Users/zekai/lua/zotero.lua"
  - "/Users/zekai/lua/abstract-section.lua"
format:
  computo-html: default
  computo-pdf: default
---

[williamlorder]

By the way,the HTML Style is wonderful and useful with so many extensive attributes

[fradav]

The error looks like to be issued by the pandoc lua interpreter, maybe one your lua filter is at fault? Without any more specifics, I could only guess.

[williamlorder]

I guess not.I then render it without filter, whereas it still went wrong somehow…在 2022年10月23日，21:30，fradav @.***> 写道： The error looks like to be issued by the pandoc lua interpreter, maybe one your lua filter is at fault? Without any more specifics, I could only guess.

—Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you authored the thread.Message ID: @.***>

[fradav]

As usual with  all software issues, you’ll have to bring more context, like code, used environment, verbose error logs and so on, otherwise we couldn’t reproduce your issue there.

[williamlorder]

Dear fradav, Can you leave your email here,I will then send you the problematic files…it covers some of my personal writing sample,while I probably send you privately.