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comses / megadapt

Containerized versions of the megadapt theoretical and empirical models
GNU General Public License v3.0
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run R model via singularity on ASU HPC #47

Open alee opened 5 years ago

alee commented 5 years ago

Singularity is available on all compute nodes via

module load singularity/2.6.0

https://rcstatus.asu.edu/agave/howto/software_modules.php

From William Dixon:

Also take note, you'll need to be sure to be on a compute node when using Singularity (login nodes are very low resource and would not run containers well at all). Running on a compute node is done if you submit your job via SBATCH or also if you are loading it interactively. See here for more information about interactively running containers:

https://rcstatus.asu.edu/agave/howto/interactive_sessions.php

alee commented 5 years ago

Singularity and Docker

https://www.sylabs.io/guides/2.6/user-guide/singularity_and_docker.html

https://www.sylabs.io/guides/2.6/user-guide/