comses / miracle

Repeatable data analysis workflows for computational models

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Get docker-compose build working #37

Closed cpritcha closed 8 years ago

cpritcha commented 8 years ago

fixed container linking issue
got working with nginx
- created self signed ssl certificate so CSRF works
- matched uids with the host nginx
- created volume directory in Dockerfile so that volume has correct user
- added proxy to radiant with nginx
- changed X-Frame-Options from DENY to SAMEORIGIN
verified that celery works in the container
split requirements into different files for production and local development
inject user into django on startup with an environment variable
added docker-compose.yml to .gitignore

cpritcha commented 8 years ago

Showstoppers

[x] Fix Deployr connection
[x] Have to figure out why metadata is rolling back adding the metadata to the database (it seems to be that the DeployR connection is not quite right but I'll have to investigate further)
[x] Get Radiant and Django containers working together
- [x] Added Proxy to Radiant and Shiny with Nginx
- [x] Allow Radiant to be embedded in iframe
[x] Get Celery working with uploads

warmdev commented 8 years ago

Was the 404 issue resolved? I think it was due to a hostname issue. When not specified using the setWebContext command, it was defaulted to localhost, and even though you can open the login page using http://deployr:7400/..., it will redirect to http://localhost:7400/..., thus generating a 404 error.

cpritcha commented 8 years ago

I found out what the issue was. I was just using the wrong url. I needed http://deployr:7400/deployr/ not the http://deployr:7400/ that I was trying to use.

cpritcha commented 8 years ago

The important pieces are done. Ready to merge.

warmdev commented 8 years ago

Great job @cpritcha ! Could you add installation of R dependencies for luxedemo and rhea to the Dockerfiles (radiant and deployr)? This will make deployment and testing easier.

cpritcha commented 8 years ago

Sure. I'll add the R library dependencies.

cpritcha commented 8 years ago

CentOS got rid of the which shell command from their install in the last few days which broke the DeployR install. I'm rebuilding and will put up the version with R dependencies shortly.

cpritcha commented 8 years ago

The SysV service doesn't seem to work either... etc/rc.d/init.d/functions does not exist. I'll try to pin to an old CentOS version.

warmdev commented 8 years ago

There might be an warning or error with etc/rc.d/init.d/functions but it does not seem to affect DeployR from working in my own test.

cpritcha commented 8 years ago

Oh. OK. There must be something else wrong then because it still isn't running properly. That was the error I got so I hoped that was it.

warmdev commented 8 years ago

Could you send your files to me and I'll help with testing.

cpritcha commented 8 years ago

Sure. I'll post in a few minutes.

cpritcha commented 8 years ago

I just posted my changes to my fork. Be sure to docker pull centos:7 to get the latest CentOS changes.

cpritcha commented 8 years ago

I ran the diagnostics script and it says that the "login failed"