The imminent plan

[yarikoptic]

• [x] do not re-partition to multiple containers but add to "Lessons learned" about necessity to modularize major steps into independent modules
• [x] fix for the failing execution. Might relate to incorrect bindmount for scratch. (@TheChymera @asmacdo)
  • [x] debug while bind mounting
  • [x] do singularity run locally or on typhon -- make sure that it works
  • [ ] run on discovery directly, not via reproman
  • [ ] run with reproman through SLURM
• [ ] "Background section" needs to get more details on relevant to the original study/this reproduction aspects: which apps used and why not the other (fmriprep), possibly reduce generic descriptions about reproducibility aspects when not directly relating.
• [ ] Reformat "Lessons learned" into major "paragraph messages", possibly splitting into "challenges" and "outlook"
• [ ] make clear(er) top level invocation rules: all to invoke all steps: analysis-oci, article-data, article. For that -- commit (into git directly) all article related figs/files so that make article would not rebuild those files.
  • [ ] make article-data should regenerate the diffs (@TheChymera)
• [ ] check and verbalize in the paper re-execution of re-execution via git clone + cd + make all + git diff.

[asmacdo]

this plan is no longer imminent, the comments are now obsolete