conchoecia odp issues - Githubissues

conchoecia / odp

oxford dot plots

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Error running test again

#82 aebaci opened 3 weeks ago
2
hmm_1_against_prots IndexError

#81 amm1623 closed 3 weeks ago
1
MissingInputException in line 289 of .../scripts/odp: Missing input files for rule n_ways_reciprocal_best:

#80 piamer opened 1 month ago
1
hmmsearch --incE 1E-5 --tblout odp/step0-blastp_results/BCnSSimakov2022_against_Csch.hmmsearch --cpu 8 --noali --notextw /Share/user/dzw/software/odp/LG_db/BCnSSimakov2022/BCnSSimakov2022.hmm odp/db/Csch_prots.pep > /dev/null

#79 dzwzs opened 3 months ago
1
Unexpected keyword retries in rule definition (odp, line 294)

#78 LittleFrogHill opened 3 months ago
2
running on M1 mac issues, solved!

#77 madeleineaaseremedios opened 3 months ago
0
"nan" being replaced in chromosome names

#76 tbrown91 opened 4 months ago
0
Flipping chromosomes

#75 victor4110 opened 4 months ago
0
Error in rule plot_synteny_nocolor

#74 HX-FAshur opened 4 months ago
1
Make documentation more clear about plotorder

#73 conchoecia opened 4 months ago
0
Error in rule analysis_D_and_FET

#72 minglibio closed 4 months ago
7
example input files

#71 songweizhi opened 5 months ago
1
segmentation fault following Matplotlib GUI usage warning - QObject::killTimer: Timers cannot be stopped from another thread

#70 AdamVS opened 5 months ago
1
config file for ALGs part 7 - Plot mixing of select linkage groups

#69 Taojianchang opened 6 months ago
1
Update .chrom parser to avoid 5+ col error

#68 conchoecia opened 6 months ago
0
IndexError: list index out of range

#67 sim3023 opened 7 months ago
2
NCBIgff2chrom -> gxf2chrom

#66 alejandrogzi opened 7 months ago
2
on main branch, color pairs vs HMMs not working

#65 conchoecia closed 7 months ago
1
IndexError: list index out of range

#64 Utkarsha-Mahanta closed 8 months ago
4
chrom from NCBI not getting all the intervals

#63 conchoecia opened 8 months ago
0
Analysis of data with a large number of duplicates

#62 maxnest closed 8 months ago
2
Segmentation fault following Matplotlib GUI usage warning

#61 AnthonyPiot91 closed 8 months ago
4
Not supported between instances of 'str' and 'int

#60 1538501175 closed 8 months ago
1
add --cores flag to multicore makefile

#59 xgrau opened 10 months ago
0
no attribute 'cores'

#58 a-pontes closed 8 months ago
4
Error

#57 ankush290307 closed 11 months ago
0
docker image

#56 phbrito opened 11 months ago
1
Error in analysis_D_and_FET / LG coloring

#55 colinshew closed 8 months ago
5
setting with copy warning in odp

#54 conchoecia closed 8 months ago
2
color_manager issue

#53 conchoecia closed 8 months ago
1
Runtime for odp_rbh_to_alignments when building new ALGs

#52 cvargas88 closed 8 months ago
3
ValueError in file /odp/scripts/odp, line 598: No objects to concatenate

#51 ask-krishnan closed 8 months ago
2
Length mismatch: Expected axis has 4 elements, new values have 5 elements

#50 alexvasilikop closed 8 months ago
4
Some protein sequences in your file are identical.

#49 alexvasilikop closed 8 months ago
6
Start and Stop in GFF to Chrom file

#48 keith-harrison closed 8 months ago
2
Jobs/rules are running out of sequence and causing input file errors

#47 changsarahl closed 8 months ago
5
Error in rule plot_synteny_nocolor

#46 yangzhou0916 closed 1 year ago
1
find duplicate protein substrings with cd-hit

#45 conchoecia opened 1 year ago
2
Add functions to check file type for odpf.check_species_input_legality()

#44 conchoecia closed 8 months ago
2
Added yield_color function and called it from the nway_rbh script.

#43 beroe opened 1 year ago
0
rbh_to_alignments sometimes pulls in too many proteins

#42 conchoecia closed 1 year ago
2
check that the program isn't being run in the install directory

#41 conchoecia closed 1 year ago
0
Draw the ribbon diagrams without clipping masks

#40 conchoecia opened 1 year ago
0
IndexError: list index out of range

#39 amesclir closed 8 months ago
4
Getting error with unclear reason

#38 Jokendo-collab closed 8 months ago
2
problem converting gff

#37 pedres opened 1 year ago
3
Questions about how to determine ALGs

#36 Mia1349 closed 8 months ago
5
Build in legality check for .chrom, .pep, and .fasta files

#35 conchoecia closed 1 year ago
0
findfont: Generic family 'sans-serif' not found because none of the following families were found: Helvetica

#34 alexvasilikop closed 8 months ago
16
Error: Sequence file _prots.pep is empty or misformatted

#33 alexvasilikop closed 1 year ago
2