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conchoecia / pauvre

Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
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Fix NameError by correcting stats.run #28

Closed SamStudio8 closed 7 years ago

SamStudio8 commented 7 years ago 
Traceback (most recent call last):
  File "/usr/bin/pauvre", line 11, in <module>
    load_entry_point('pauvre==0.1.85', 'console_scripts', 'pauvre')()
  File "/usr/lib/python3.6/site-packages/pauvre-0.1.85-py3.6.egg/pauvre/pauvre_main.py", line 403, in main
    args.func(parser, args)
  File "/usr/lib/python3.6/site-packages/pauvre-0.1.85-py3.6.egg/pauvre/pauvre_main.py", line 63, in run_subtool
    submodule.run(args)
  File "/usr/lib/python3.6/site-packages/pauvre-0.1.85-py3.6.egg/pauvre/stats.py", line 248, in run
    stats(args.fastq, lengths, meanQuals, args.histogram)
NameError: name 'lengths' is not defined