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conda-forge / astrometry-feedstock

A conda-smithy repository for astrometry.
BSD 3-Clause "New" or "Revised" License
5 stars 2 forks source link

astrometry does not install correctly #29

Closed m-stclair closed 2 years ago

m-stclair commented 2 years ago

Solution to issue cannot be found in the documentation.

Issue

Installing astrometry with conda succeeds without error messages, but astrometry is not linked correctly in the resulting environment. This appears to have something to do with misplaced files in the environment directory tree.

Example:

(base) $ conda create -n astrometry_test python=3.9 astrometry
Collecting package metadata (current_repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /opt/mambaforge/envs/astrometry_test

  added / updated specs:
    - astrometry
    - python=3.9

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
  astrometry         conda-forge/linux-64::astrometry-0.90-py39h1bc5e43_0
  astropy            conda-forge/linux-64::astropy-5.0.4-py39hd257fcd_0
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
  c-ares             conda-forge/linux-64::c-ares-1.18.1-h7f98852_0
  ca-certificates    conda-forge/linux-64::ca-certificates-2021.10.8-ha878542_0
  cairo              conda-forge/linux-64::cairo-1.16.0-ha61ee94_1011
  cfitsio            conda-forge/linux-64::cfitsio-4.1.0-hd9d235c_0
  expat              conda-forge/linux-64::expat-2.4.8-h27087fc_0
  font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0
  font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0
  font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0
  font-ttf-ubuntu    conda-forge/noarch::font-ttf-ubuntu-0.83-hab24e00_0
  fontconfig         conda-forge/linux-64::fontconfig-2.14.0-h8e229c2_0
  fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0
  fonts-conda-forge  conda-forge/noarch::fonts-conda-forge-1-0
  freetype           conda-forge/linux-64::freetype-2.10.4-h0708190_1
  gettext            conda-forge/linux-64::gettext-0.19.8.1-h73d1719_1008
  ghostscript        conda-forge/linux-64::ghostscript-9.54.0-h27087fc_2
  gsl                conda-forge/linux-64::gsl-2.7-he838d99_0
  icu                conda-forge/linux-64::icu-70.1-h27087fc_0
  importlib-metadata conda-forge/linux-64::importlib-metadata-4.11.3-py39hf3d152e_1
  jbig               conda-forge/linux-64::jbig-2.1-h7f98852_2003
  jpeg               conda-forge/linux-64::jpeg-9e-h166bdaf_1
  keyutils           conda-forge/linux-64::keyutils-1.6.1-h166bdaf_0
  krb5               conda-forge/linux-64::krb5-1.19.3-h08a2579_0
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.36.1-hea4e1c9_2
  lerc               conda-forge/linux-64::lerc-3.0-h9c3ff4c_0
  libblas            conda-forge/linux-64::libblas-3.9.0-14_linux64_openblas
  libcblas           conda-forge/linux-64::libcblas-3.9.0-14_linux64_openblas
  libcurl            conda-forge/linux-64::libcurl-7.83.0-h2283fc2_0
  libdeflate         conda-forge/linux-64::libdeflate-1.10-h7f98852_0
  libedit            conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2
  libev              conda-forge/linux-64::libev-4.33-h516909a_1
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5
  libgcc-ng          conda-forge/linux-64::libgcc-ng-11.2.0-h1d223b6_16
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-11.2.0-h69a702a_16
  libgfortran5       conda-forge/linux-64::libgfortran5-11.2.0-h5c6108e_16
  libglib            conda-forge/linux-64::libglib-2.70.2-h174f98d_4
  libgomp            conda-forge/linux-64::libgomp-11.2.0-h1d223b6_16
  libiconv           conda-forge/linux-64::libiconv-1.16-h516909a_0
  liblapack          conda-forge/linux-64::liblapack-3.9.0-14_linux64_openblas
  libnghttp2         conda-forge/linux-64::libnghttp2-1.47.0-he49606f_0
  libnsl             conda-forge/linux-64::libnsl-2.0.0-h7f98852_0
  libopenblas        conda-forge/linux-64::libopenblas-0.3.20-pthreads_h78a6416_0
  libpng             conda-forge/linux-64::libpng-1.6.37-h21135ba_2
  libssh2            conda-forge/linux-64::libssh2-1.10.0-ha35d2d1_2
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-11.2.0-he4da1e4_16
  libtiff            conda-forge/linux-64::libtiff-4.3.0-h542a066_3
  libuuid            conda-forge/linux-64::libuuid-2.32.1-h7f98852_1000
  libwebp-base       conda-forge/linux-64::libwebp-base-1.2.2-h7f98852_1
  libxcb             conda-forge/linux-64::libxcb-1.13-h7f98852_1004
  libxml2            conda-forge/linux-64::libxml2-2.9.13-h22db469_0
  libzlib            conda-forge/linux-64::libzlib-1.2.11-h166bdaf_1014
  lz4-c              conda-forge/linux-64::lz4-c-1.9.3-h9c3ff4c_1
  ncurses            conda-forge/linux-64::ncurses-6.3-h27087fc_1
  netpbm             conda-forge/linux-64::netpbm-10.73.39-pl5321h79e5dd2_0
  numpy              conda-forge/linux-64::numpy-1.22.3-py39hc58783e_2
  openssl            conda-forge/linux-64::openssl-3.0.2-h166bdaf_1
  packaging          conda-forge/noarch::packaging-21.3-pyhd8ed1ab_0
  pcre               conda-forge/linux-64::pcre-8.45-h9c3ff4c_0
  perl               conda-forge/linux-64::perl-5.32.1-2_h7f98852_perl5
  pgplot             conda-forge/linux-64::pgplot-5.2.2-h68245ad_1008
  pip                conda-forge/noarch::pip-22.0.4-pyhd8ed1ab_0
  pixman             conda-forge/linux-64::pixman-0.40.0-h36c2ea0_0
  pthread-stubs      conda-forge/linux-64::pthread-stubs-0.4-h36c2ea0_1001
  pyerfa             conda-forge/linux-64::pyerfa-2.0.0.1-py39hd257fcd_2
  pyparsing          conda-forge/noarch::pyparsing-3.0.8-pyhd8ed1ab_0
  python             conda-forge/linux-64::python-3.9.12-h2660328_1_cpython
  python_abi         conda-forge/linux-64::python_abi-3.9-2_cp39
  pyyaml             conda-forge/linux-64::pyyaml-6.0-py39hb9d737c_4
  readline           conda-forge/linux-64::readline-8.1-h46c0cb4_0
  setuptools         conda-forge/linux-64::setuptools-62.1.0-py39hf3d152e_0
  sqlite             conda-forge/linux-64::sqlite-3.38.3-h4ff8645_0
  tk                 conda-forge/linux-64::tk-8.6.12-h27826a3_0
  tzdata             conda-forge/noarch::tzdata-2022a-h191b570_0
  wcslib             conda-forge/linux-64::wcslib-7.7-h6195f97_1
  wheel              conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  xorg-kbproto       conda-forge/linux-64::xorg-kbproto-1.0.7-h7f98852_1002
  xorg-libice        conda-forge/linux-64::xorg-libice-1.0.10-h7f98852_0
  xorg-libsm         conda-forge/linux-64::xorg-libsm-1.2.3-hd9c2040_1000
  xorg-libx11        conda-forge/linux-64::xorg-libx11-1.7.2-h7f98852_0
  xorg-libxau        conda-forge/linux-64::xorg-libxau-1.0.9-h7f98852_0
  xorg-libxdmcp      conda-forge/linux-64::xorg-libxdmcp-1.1.3-h7f98852_0
  xorg-libxext       conda-forge/linux-64::xorg-libxext-1.3.4-h7f98852_1
  xorg-libxrender    conda-forge/linux-64::xorg-libxrender-0.9.10-h7f98852_1003
  xorg-renderproto   conda-forge/linux-64::xorg-renderproto-0.11.1-h7f98852_1002
  xorg-xextproto     conda-forge/linux-64::xorg-xextproto-7.3.0-h7f98852_1002
  xorg-xproto        conda-forge/linux-64::xorg-xproto-7.0.31-h7f98852_1007
  xz                 conda-forge/linux-64::xz-5.2.5-h516909a_1
  yaml               conda-forge/linux-64::yaml-0.2.5-h7f98852_2
  zipp               conda-forge/noarch::zipp-3.8.0-pyhd8ed1ab_0
  zlib               conda-forge/linux-64::zlib-1.2.11-h166bdaf_1014
  zstd               conda-forge/linux-64::zstd-1.5.2-ha95c52a_0

Proceed ([y]/n)? y

Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
#     $ conda activate astrometry_test
#
# To deactivate an active environment, use
#
#     $ conda deactivate

(base) $ conda activate astrometry_test
(astrometry_test) $ python
Python 3.9.12 | packaged by conda-forge | (main, Mar 24 2022, 23:22:55) 
[GCC 10.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import astrometry
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ModuleNotFoundError: No module named 'astrometry'

Installed packages

# packages in environment at /opt/mambaforge/envs/astrometry_test:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
astrometry                0.90             py39h1bc5e43_0    conda-forge
astropy                   5.0.4            py39hd257fcd_0    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
ca-certificates           2021.10.8            ha878542_0    conda-forge
cairo                     1.16.0            ha61ee94_1011    conda-forge
cfitsio                   4.1.0                hd9d235c_0    conda-forge
expat                     2.4.8                h27087fc_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.0               h8e229c2_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
freetype                  2.10.4               h0708190_1    conda-forge
gettext                   0.19.8.1          h73d1719_1008    conda-forge
ghostscript               9.54.0               h27087fc_2    conda-forge
gsl                       2.7                  he838d99_0    conda-forge
icu                       70.1                 h27087fc_0    conda-forge
importlib-metadata        4.11.3           py39hf3d152e_1    conda-forge
jbig                      2.1               h7f98852_2003    conda-forge
jpeg                      9e                   h166bdaf_1    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.19.3               h08a2579_0    conda-forge
ld_impl_linux-64          2.36.1               hea4e1c9_2    conda-forge
lerc                      3.0                  h9c3ff4c_0    conda-forge
libblas                   3.9.0           14_linux64_openblas    conda-forge
libcblas                  3.9.0           14_linux64_openblas    conda-forge
libcurl                   7.83.0               h2283fc2_0    conda-forge
libdeflate                1.10                 h7f98852_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 11.2.0              h1d223b6_16    conda-forge
libgfortran-ng            11.2.0              h69a702a_16    conda-forge
libgfortran5              11.2.0              h5c6108e_16    conda-forge
libglib                   2.70.2               h174f98d_4    conda-forge
libgomp                   11.2.0              h1d223b6_16    conda-forge
libiconv                  1.16                 h516909a_0    conda-forge
liblapack                 3.9.0           14_linux64_openblas    conda-forge
libnghttp2                1.47.0               he49606f_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libopenblas               0.3.20          pthreads_h78a6416_0    conda-forge
libpng                    1.6.37               h21135ba_2    conda-forge
libssh2                   1.10.0               ha35d2d1_2    conda-forge
libstdcxx-ng              11.2.0              he4da1e4_16    conda-forge
libtiff                   4.3.0                h542a066_3    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libwebp-base              1.2.2                h7f98852_1    conda-forge
libxcb                    1.13              h7f98852_1004    conda-forge
libxml2                   2.9.13               h22db469_0    conda-forge
libzlib                   1.2.11            h166bdaf_1014    conda-forge
lz4-c                     1.9.3                h9c3ff4c_1    conda-forge
ncurses                   6.3                  h27087fc_1    conda-forge
netpbm                    10.73.39        pl5321h79e5dd2_0    conda-forge
numpy                     1.22.3           py39hc58783e_2    conda-forge
openssl                   3.0.2                h166bdaf_1    conda-forge
packaging                 21.3               pyhd8ed1ab_0    conda-forge
pcre                      8.45                 h9c3ff4c_0    conda-forge
perl                      5.32.1          2_h7f98852_perl5    conda-forge
pgplot                    5.2.2             h68245ad_1008    conda-forge
pip                       22.0.4             pyhd8ed1ab_0    conda-forge
pixman                    0.40.0               h36c2ea0_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
pyerfa                    2.0.0.1          py39hd257fcd_2    conda-forge
pyparsing                 3.0.8              pyhd8ed1ab_0    conda-forge
python                    3.9.12          h2660328_1_cpython    conda-forge
python_abi                3.9                      2_cp39    conda-forge
pyyaml                    6.0              py39hb9d737c_4    conda-forge
readline                  8.1                  h46c0cb4_0    conda-forge
setuptools                62.1.0           py39hf3d152e_0    conda-forge
sqlite                    3.38.3               h4ff8645_0    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
tzdata                    2022a                h191b570_0    conda-forge
wcslib                    7.7                  h6195f97_1    conda-forge
wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.7.2                h7f98852_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h7f98852_1    conda-forge
xorg-libxrender           0.9.10            h7f98852_1003    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.5                h516909a_1    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
zipp                      3.8.0              pyhd8ed1ab_0    conda-forge
zlib                      1.2.11            h166bdaf_1014    conda-forge
zstd                      1.5.2                ha95c52a_0    conda-forge

Environment info

active environment : astrometry_test
    active env location : /opt/mambaforge/envs/astrometry_test
            shell level : 2
       user config file : /home/michael/.condarc
 populated config files : /opt/mambaforge/.condarc
          conda version : 4.12.0
    conda-build version : not installed
         python version : 3.9.10.final.0
       virtual packages : __cuda=11.6=0
                          __linux=5.16.19=0
                          __glibc=2.35=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /opt/mambaforge  (writable)
      conda av data dir : /opt/mambaforge/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /opt/mambaforge/pkgs
                          /home/michael/.conda/pkgs
       envs directories : /opt/mambaforge/envs
                          /home/michael/.conda/envs
               platform : linux-64
             user-agent : conda/4.12.0 requests/2.27.1 CPython/3.9.10 Linux/5.16.19-76051619-generic pop/22.04 glibc/2.35
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False