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conda-forge / fiona-feedstock

A conda-smithy repository for fiona.
BSD 3-Clause "New" or "Revised" License
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ImportError on macOS after libtiff update #158

Closed martinfleis closed 4 years ago

martinfleis commented 4 years ago

Issue:

Installing Fiona in a fresh environment on macOS will result in ImportError on import fiona. That is likely caused by the recent update of libtiff (2 days ago). See the Traceback below.

edit: the issue is not present on ubuntu.

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/Users/martin/anaconda3/envs/fiona/lib/python3.8/site-packages/fiona/__init__.py", line 84, in <module>
    from fiona.collection import BytesCollection, Collection
  File "/Users/martin/anaconda3/envs/fiona/lib/python3.8/site-packages/fiona/collection.py", line 9, in <module>
    from fiona.ogrext import Iterator, ItemsIterator, KeysIterator
ImportError: dlopen(/Users/martin/anaconda3/envs/fiona/lib/python3.8/site-packages/fiona/ogrext.cpython-38-darwin.so, 2): Library not loaded: @rpath/libwebp.7.dylib
  Referenced from: /Users/martin/anaconda3/envs/fiona/lib/libtiff.5.dylib
  Reason: Incompatible library version: libtiff.5.dylib requires version 9.0.0 or later, but libwebp.7.dylib provides version 8.0.0


Environment (conda list):

``` $ conda list # Name Version Build Channel attrs 19.3.0 py_0 conda-forge boost-cpp 1.72.0 hdf9ef73_0 conda-forge bzip2 1.0.8 h0b31af3_2 conda-forge ca-certificates 2019.11.28 hecc5488_0 conda-forge cairo 1.16.0 hec6a9b0_1003 conda-forge certifi 2019.11.28 py38h32f6830_1 conda-forge cfitsio 3.470 h84d2f63_2 conda-forge click 7.1.1 pyh8c360ce_0 conda-forge click-plugins 1.1.1 py_0 conda-forge cligj 0.5.0 py_0 conda-forge curl 7.68.0 h8754def_0 conda-forge expat 2.2.9 h4a8c4bd_2 conda-forge fiona 1.8.13 py38he71f6a4_0 conda-forge fontconfig 2.13.1 h6b1039f_1001 conda-forge freetype 2.10.1 h8da9a1a_0 conda-forge freexl 1.0.5 h1de35cc_1002 conda-forge gdal 3.0.4 py38h9f7df5a_2 conda-forge geos 3.8.1 h4a8c4bd_0 conda-forge geotiff 1.5.1 h4bdff65_9 conda-forge gettext 0.19.8.1 h46ab8bc_1002 conda-forge giflib 5.2.1 h0b31af3_2 conda-forge glib 2.58.3 py38h338c551_1003 conda-forge hdf4 4.2.13 h84186c3_1003 conda-forge hdf5 1.10.5 nompi_h3e39495_1104 conda-forge icu 64.2 h6de7cb9_1 conda-forge jpeg 9c h1de35cc_1001 conda-forge json-c 0.13.1 h1de35cc_1001 conda-forge kealib 1.4.12 h2324030_0 conda-forge krb5 1.16.4 h1752a42_0 conda-forge libblas 3.8.0 16_openblas conda-forge libcblas 3.8.0 16_openblas conda-forge libcurl 7.68.0 h709d2b2_0 conda-forge libcxx 9.0.1 1 conda-forge libdap4 3.20.4 habf5908_0 conda-forge libedit 3.1.20170329 hcfe32e1_1001 conda-forge libffi 3.2.1 h4a8c4bd_1007 conda-forge libgdal 3.0.4 hbf8f8d6_2 conda-forge libgfortran 4.0.0 2 conda-forge libiconv 1.15 h0b31af3_1006 conda-forge libkml 1.3.0 h169b8f9_1011 conda-forge liblapack 3.8.0 16_openblas conda-forge libnetcdf 4.7.3 nompi_hda4e5f1_101 conda-forge libopenblas 0.3.9 h3d69b6c_0 conda-forge libpng 1.6.37 hbbe82c9_1 conda-forge libpq 12.2 h554dc5a_0 conda-forge libspatialite 4.3.0a hbcd37d4_1037 conda-forge libssh2 1.8.2 hcdc9a53_2 conda-forge libtiff 4.1.0 h2ae36a8_5 conda-forge libwebp 1.0.2 hd3bf737_5 conda-forge libwebp-base 1.1.0 2 conda-forge libxml2 2.9.10 h53d96d6_0 conda-forge llvm-openmp 9.0.1 h28b9765_2 conda-forge lz4-c 1.8.3 h6de7cb9_1001 conda-forge munch 2.5.0 py_0 conda-forge ncurses 6.1 h0a44026_1002 conda-forge numpy 1.18.1 py38hde6bac1_0 conda-forge openjpeg 2.3.1 h254dc36_3 conda-forge openssl 1.1.1e h0b31af3_0 conda-forge pcre 8.44 h4a8c4bd_0 conda-forge pip 20.0.2 py_2 conda-forge pixman 0.38.0 h01d97ff_1003 conda-forge poppler 0.67.0 h16886b5_8 conda-forge poppler-data 0.4.9 1 conda-forge postgresql 12.2 h16d8c28_0 conda-forge proj 6.3.1 h773a61f_1 conda-forge python 3.8.2 hdc38147_4_cpython conda-forge python_abi 3.8 1_cp38 conda-forge readline 8.0 hcfe32e1_0 conda-forge setuptools 46.0.0 py38h32f6830_2 conda-forge shapely 1.7.0 py38h5b1fbde_2 conda-forge six 1.14.0 py_1 conda-forge sqlite 3.30.1 h93121df_0 conda-forge tbb 2018.0.5 h2d50403_0 conda-forge tiledb 1.7.0 hd5e958f_2 conda-forge tk 8.6.10 hbbe82c9_0 conda-forge tzcode 2019a h01d97ff_1002 conda-forge wheel 0.34.2 py_1 conda-forge xerces-c 3.2.2 h8f8adb3_1004 conda-forge xz 5.2.4 h1de35cc_1001 conda-forge zlib 1.2.11 h0b31af3_1006 conda-forge zstd 1.4.4 hed8d7c8_2 conda-forge ```


Details about conda and system ( conda info ):

``` $ conda info active environment : fiona active env location : /Users/martin/anaconda3/envs/fiona shell level : 7 user config file : /Users/martin/.condarc populated config files : /Users/martin/.condarc conda version : 4.8.2 conda-build version : 3.18.9 python version : 3.6.9.final.0 virtual packages : __osx=10.15.3 base environment : /Users/martin/anaconda3 (writable) channel URLs : https://repo.anaconda.com/pkgs/main/osx-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/osx-64 https://repo.anaconda.com/pkgs/r/noarch https://conda.anaconda.org/conda-forge/osx-64 https://conda.anaconda.org/conda-forge/noarch https://conda.anaconda.org/udst/osx-64 https://conda.anaconda.org/udst/noarch package cache : /Users/martin/anaconda3/pkgs /Users/martin/.conda/pkgs envs directories : /Users/martin/anaconda3/envs /Users/martin/.conda/envs platform : osx-64 user-agent : conda/4.8.2 requests/2.22.0 CPython/3.6.9 Darwin/19.3.0 OSX/10.15.3 UID:GID : 501:20 netrc file : None offline mode : False ```
martinfleis commented 4 years ago

Fixed in upstream.