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conda-forge / geopandas-feedstock

A conda-smithy repository for geopandas.
BSD 3-Clause "New" or "Revised" License
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Import Error: Libncurses, Libspatialite? #46

Closed Per48edjes closed 6 years ago

Per48edjes commented 6 years ago

Hi all, opening up a new issue since it seems I've cleared the gdal and multiple channel snafus (by making a new environment, setting conda-forge as the default, and fresh-installing geopandas). Apologies in advance if this should be folded in elsewhere! (Also, full disclosure, I'm pretty green when it comes to working with Conda.)

Issue:

Here's a link to my issue on SO, but I'll reproduce the necessary bits below! 

ImportError                               Traceback (most recent call last)
<ipython-input-1-e48a390bcc03> in <module>()
      7 import matplotlib.pyplot as plt
      8 from matplotlib.ticker import FuncFormatter, MultipleLocator, AutoMinorLocator
----> 9 import geopandas as gpd
     10 
     11 

//anaconda/lib/python3.6/site-packages/geopandas/__init__.py in <module>()
      2 from geopandas.geodataframe import GeoDataFrame
      3 
----> 4 from geopandas.io.file import read_file
      5 from geopandas.io.sql import read_postgis
      6 from geopandas.tools import sjoin

//anaconda/lib/python3.6/site-packages/geopandas/io/file.py in <module>()
      1 import os
      2 
----> 3 import fiona
      4 import numpy as np
      5 import six

//anaconda/lib/python3.6/site-packages/fiona/__init__.py in <module>()
     67 from six import string_types
     68 
---> 69 from fiona.collection import Collection, BytesCollection, vsi_path
     70 from fiona._drivers import driver_count, GDALEnv
     71 from fiona.drvsupport import supported_drivers

//anaconda/lib/python3.6/site-packages/fiona/collection.py in <module>()
      7 
      8 from fiona import compat
----> 9 from fiona.ogrext import Iterator, ItemsIterator, KeysIterator
     10 from fiona.ogrext import Session, WritingSession
     11 from fiona.ogrext import (

ImportError: dlopen(//anaconda/lib/python3.6/site-packages/fiona/ogrext.cpython-36m-darwin.so, 2): Library not loaded: @rpath/libncurses.6.dylib
  Referenced from: //anaconda/lib/libspatialite.7.dylib
  Reason: image not found


Environment (conda list):

``` $ conda list # Name Version Build Channel anaconda custom py36ha4fed55_0 appnope 0.1.0 py36_1000 conda-forge backcall 0.1.0 py_0 conda-forge blas 1.0 mkl bleach 3.0.2 py_0 conda-forge boost-cpp 1.67.0 h3a22d5f_0 conda-forge bzip2 1.0.6 1 conda-forge ca-certificates 2018.8.24 ha4d7672_0 conda-forge cairo 1.14.12 he6fea26_5 conda-forge certifi 2018.8.24 py36_1001 conda-forge clangdev 6.0.1 default_1 conda-forge click 7.0 py_0 conda-forge click-plugins 1.0.4 py_0 conda-forge cligj 0.5.0 py_0 conda-forge curl 7.61.1 h74213dd_2 conda-forge cycler 0.10.0 py_1 conda-forge decorator 4.3.0 py_0 conda-forge descartes 1.1.0 py_2 conda-forge entrypoints 0.2.3 py36_1002 conda-forge expat 2.2.5 hfc679d8_2 conda-forge fiona 1.7.13 py36hb00a9d7_3 conda-forge fontconfig 2.13.1 hce039c3_0 conda-forge freetype 2.9.1 h6debe1e_4 conda-forge freexl 1.0.5 h470a237_2 conda-forge gdal 2.2.4 py36hb00a9d7_9 conda-forge geopandas 0.4.0 py_1 conda-forge geos 3.6.2 hfc679d8_3 conda-forge geotiff 1.4.2 h700e5ad_4 conda-forge gettext 0.19.8.1 h1f1d5ed_1 conda-forge giflib 5.1.4 h470a237_1 conda-forge glib 2.55.0 h464dc38_2 conda-forge hdf4 4.2.13 h951d187_2 conda-forge hdf5 1.10.2 hc401514_2 conda-forge icu 58.2 hfc679d8_0 conda-forge intel-openmp 2019.0 118 ipykernel 5.1.0 pyh24bf2e0_0 conda-forge ipython 7.0.1 py36h24bf2e0_1000 conda-forge ipython_genutils 0.2.0 py_1 conda-forge jedi 0.13.1 py36_1000 conda-forge jinja2 2.10 py_1 conda-forge jpeg 9c h470a237_1 conda-forge json-c 0.12.1 h470a237_1 conda-forge jsonschema 2.6.0 py36_1002 conda-forge jupyter_client 5.2.3 py_1 conda-forge jupyter_core 4.4.0 py_0 conda-forge kealib 1.4.9 h0bee7d0_2 conda-forge kiwisolver 1.0.1 py36h2d50403_2 conda-forge krb5 1.16.1 hbb41f41_0 conda-forge libcurl 7.61.1 hbdb9355_2 conda-forge libcxx 6.0.1 0 conda-forge libdap4 3.19.1 h18059cb_1 conda-forge libedit 3.1.20170329 haf1bffa_1 conda-forge libffi 3.2.1 hfc679d8_5 conda-forge libgdal 2.2.4 hdb23ba1_9 conda-forge libgfortran 3.0.1 h93005f0_2 libiconv 1.15 h470a237_3 conda-forge libkml 1.3.0 hccc92b1_8 conda-forge libnetcdf 4.6.1 h039f2a5_8 conda-forge libpng 1.6.35 ha92aebf_2 conda-forge libpq 10.5 hf16a0db_0 conda-forge libsodium 1.0.16 h470a237_1 conda-forge libspatialindex 1.8.5 hfc679d8_3 conda-forge libspatialite 4.3.0a h3b29d86_23 conda-forge libssh2 1.8.0 h5b517e9_2 conda-forge libtiff 4.0.9 he6b73bb_2 conda-forge libxml2 2.9.8 h422b904_5 conda-forge llvm-meta 6.0.1 0 conda-forge llvmdev 6.0.1 h2d50403_2 conda-forge markupsafe 1.0 py36h470a237_1 conda-forge matplotlib 3.0.0 py36h45c993b_1 conda-forge mistune 0.8.4 py36h470a237_0 conda-forge mkl 2019.0 118 mkl_fft 1.0.6 py36_0 conda-forge mkl_random 1.0.1 py36_0 conda-forge munch 2.3.2 py_0 conda-forge nbconvert 5.3.1 py_1 conda-forge nbformat 4.4.0 py_1 conda-forge ncurses 6.1 hfc679d8_1 conda-forge notebook 5.7.0 py36_1000 conda-forge numpy 1.15.2 py36h6a91979_1 numpy-base 1.15.2 py36h8a80b8c_1 openblas 0.3.3 ha44fe06_1 conda-forge openjpeg 2.3.0 h316dc23_3 conda-forge openssl 1.0.2p h470a237_1 conda-forge pandas 0.23.4 py36hf8a1672_0 conda-forge pandoc 2.3.1 0 conda-forge pandocfilters 1.4.2 py_1 conda-forge parso 0.3.1 py_0 conda-forge pcre 8.41 hfc679d8_3 conda-forge pexpect 4.6.0 py36_1000 conda-forge pickleshare 0.7.5 py36_1000 conda-forge pip 18.1 py36_1000 conda-forge pixman 0.34.0 h470a237_3 conda-forge poppler 0.67.0 h4d7e492_3 conda-forge poppler-data 0.4.9 0 conda-forge postgresql 10.5 ha408888_0 conda-forge proj4 4.9.3 h470a237_8 conda-forge prometheus_client 0.4.2 py_0 conda-forge prompt_toolkit 2.0.6 py_0 conda-forge psycopg2 2.7.5 py36hdffb7b8_2 conda-forge ptyprocess 0.6.0 py36_1000 conda-forge pygments 2.2.0 py_1 conda-forge pyparsing 2.2.2 py_0 conda-forge pyproj 1.9.5.1 py36h508ed2a_5 conda-forge pysal 1.14.4.post2 py36_1 conda-forge python 3.6.6 h5001a0f_0 conda-forge python-dateutil 2.7.3 py_0 conda-forge pytz 2018.5 py_0 conda-forge pyzmq 17.1.2 py36hae99301_1 conda-forge readline 7.0 haf1bffa_1 conda-forge rtree 0.8.3 py36_1000 conda-forge scipy 1.1.0 py36h28f7352_1 send2trash 1.5.0 py_0 conda-forge setuptools 40.4.3 py36_0 conda-forge shapely 1.6.4 py36h164cb2d_1 conda-forge simplegeneric 0.8.1 py_1 conda-forge six 1.11.0 py36_1001 conda-forge sqlalchemy 1.2.12 py36h470a237_0 conda-forge sqlite 3.25.2 hb1c47c0_0 conda-forge terminado 0.8.1 py36_1001 conda-forge testpath 0.4.2 py36_1000 conda-forge tk 8.6.8 ha92aebf_0 conda-forge tornado 5.1.1 py36h470a237_0 conda-forge traitlets 4.3.2 py36_1000 conda-forge wcwidth 0.1.7 py_1 conda-forge webencodings 0.5.1 py_1 conda-forge wheel 0.32.1 py36_0 conda-forge xerces-c 3.2.0 h5d6a6da_2 conda-forge xz 5.2.4 h470a237_1 conda-forge zeromq 4.2.5 hfc679d8_5 conda-forge zlib 1.2.11 h470a237_3 conda-forge ```


Details about conda and system ( conda info ):

``` $ conda info active environment : new_env active env location : //anaconda/envs/new_env shell level : 1 user config file : /Users/ravidayabhai/.condarc populated config files : /Users/ravidayabhai/.condarc conda version : 4.5.11 conda-build version : not installed python version : 3.6.6.final.0 base environment : //anaconda (writable) channel URLs : https://conda.anaconda.org/conda-forge/osx-64 https://conda.anaconda.org/conda-forge/noarch https://repo.anaconda.com/pkgs/main/osx-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/free/osx-64 https://repo.anaconda.com/pkgs/free/noarch https://repo.anaconda.com/pkgs/r/osx-64 https://repo.anaconda.com/pkgs/r/noarch https://repo.anaconda.com/pkgs/pro/osx-64 https://repo.anaconda.com/pkgs/pro/noarch package cache : //anaconda/pkgs /Users/ravidayabhai/.conda/pkgs envs directories : //anaconda/envs /Users/ravidayabhai/.conda/envs platform : osx-64 user-agent : conda/4.5.11 requests/2.19.1 CPython/3.6.6 Darwin/17.7.0 OSX/10.13.6 UID:GID : 502:20 netrc file : None offline mode : False ```

Any help would be most appreciated! 🙏

ocefpaf commented 6 years ago

Things as working on Linux for me with:

conda create --name TEST --channel conda-forge python=3.6 geopandas --yes
conda activate TEST
python -c "import geopandas; print(geopandas.__version__)"

However, I don't have a Mac to test it so I'm issuing a re-render in fiona to ensure we have a package with latest pinning. See https://github.com/conda-forge/geopandas-feedstock/issues/46

PS: closing this b/c it is not a geopandas issue. We can track this at the PR I mentioned above.