Closed omaraltayyan closed 3 years ago
ocefpaf
commented
3 years ago Can you try to install those with mamba? It has some better conflict messages and will help us debug this. But probably something will need to be rebuilt with modern versions. I'm guessing rdkit b/c that one is quite complicated.
omaraltayyan
commented
3 years ago Can you try to install those with mamba? It has some better conflict messages and will help us debug this. But probably something will need to be rebuilt with modern versions. I'm guessing rdkit b/c that one is quite complicated.
Please note that rdkit has nothing to do with this, i tried disabling it, here's the message i received
#14 0.699 Collecting package metadata (current_repodata.json): ...working... done
#14 19.15 Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
#14 20.20 Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
#14 21.74 Collecting package metadata (repodata.json): ...working... done
#14 95.93 Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
#14 101.0 Solving environment: ...working...
#14 108.6 Found conflicts! Looking for incompatible packages.
#14 108.6 This can take several minutes. Press CTRL-C to abort.
#14 110.4
Building graph of deps: 0%| | 0/10 [00:00<?, ?it/s]
Examining @/linux-64::__glibc==2.28=0: 0%| | 0/10 [00:00<?, ?it/s]
Examining blinker==1.4: 10%|â–ˆ | 1/10 [00:00<00:00, 4686.37it/s]
Examining psutil==5.8.0: 20%|██ | 2/10 [00:00<00:00, 32.63it/s]
Examining @/linux-64::__archspec==1=x86_64: 30%|███ | 3/10 [00:00<00:00, 22.13it/s]
Examining @/linux-64::__archspec==1=x86_64: 40%|████ | 4/10 [00:00<00:00, 29.48it/s]
Examining flask==1.1.2: 40%|████ | 4/10 [00:00<00:00, 29.48it/s]
Examining @/linux-64::__unix==0=0: 50%|█████ | 5/10 [00:00<00:00, 29.48it/s]
Examining sentry-sdk==0.20.3: 60%|██████ | 6/10 [00:00<00:00, 29.48it/s]
Examining gunicorn==20.1.0: 70%|███████ | 7/10 [00:00<00:00, 29.48it/s]
Examining @/linux-64::__linux==4.19.121=0: 80%|████████ | 8/10 [00:00<00:00, 29.48it/s]
Examining @/linux-64::__linux==4.19.121=0: 90%|█████████ | 9/10 [00:00<00:00, 29.13it/s]
Examining python=3.8: 90%|█████████ | 9/10 [00:00<00:00, 29.13it/s]
Determining conflicts: 0%| | 0/10 [00:00<?, ?it/s]
Examining conflict for blinker psutil flask sentry-sdk gunicorn python: 0%| | 0/10 [00:00<?, ?it/s]
Examining conflict for blinker psutil flask sentry-sdk gunicorn: 10%|â–ˆ | 1/10 [00:00<00:00, 14.41it/s]
Examining conflict for psutil gunicorn: 20%|██ | 2/10 [00:00<00:00, 11.85it/s]
Examining conflict for psutil gunicorn: 30%|███ | 3/10 [00:00<00:00, 17.76it/s]
Examining conflict for psutil python: 30%|███ | 3/10 [00:00<00:00, 17.76it/s]
Examining conflict for gunicorn flask python: 40%|████ | 4/10 [00:00<00:00, 17.76it/s]
Examining conflict for gunicorn flask python: 50%|█████ | 5/10 [00:00<00:00, 17.73it/s]
Examining conflict for gunicorn sentry-sdk: 50%|█████ | 5/10 [00:00<00:00, 17.73it/s]
failed
UnsatisfiableError: The following specifications were found
to be incompatible with the existing python installation in your environment:
Specifications:
- gunicorn==20.1.0 -> python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.9,<3.10.0a0']
Your python: python=3.8
If python is on the left-most side of the chain, that's the version you've asked for.
When python appears to the right, that indicates that the thing on the left is somehow
not available for the python version you are constrained to. Note that conda will not
change your python version to a different minor version unless you explicitly specify
that.
The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versions
Package pypy3.6 conflicts for:
psutil==5.8.0 -> python[version='>=3.6,<3.7.0a0'] -> pypy3.6[version='7.3.*|7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*']
blinker==1.4 -> python -> pypy3.6[version='7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*']
gunicorn==20.1.0 -> python[version='>=3.6,<3.7.0a0'] -> pypy3.6[version='7.3.*|7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*|>=7.3.2|>=7.3.1']
flask==1.1.2 -> python -> pypy3.6[version='7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*']
gunicorn==20.1.0 -> pypy3.6[version='>=7.3.3']
sentry-sdk==0.20.3 -> certifi -> pypy3.6[version='7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*|>=7.3.1|>=7.3.2|>=7.3.3']
psutil==5.8.0 -> pypy3.6[version='>=7.3.3']
Package expat conflicts for:
psutil==5.8.0 -> pypy3.7[version='>=7.3.3'] -> expat[version='>=2.2.9,<3.0.0a0|>=2.3.0,<3.0a0']
gunicorn==20.1.0 -> pypy3.7[version='>=7.3.3'] -> expat[version='>=2.2.9,<3.0.0a0|>=2.3.0,<3.0a0']
Package _libgcc_mutex conflicts for:
python=3.8 -> libgcc-ng[version='>=9.3.0'] -> _libgcc_mutex[version='*|0.1',build='main|conda_forge']
psutil==5.8.0 -> libgcc-ng[version='>=9.3.0'] -> _libgcc_mutex==0.1=conda_forge
Package certifi conflicts for:
gunicorn==20.1.0 -> setuptools[version='>=3.0'] -> certifi[version='>=2016.09|>=2016.9.26']
sentry-sdk==0.20.3 -> certifi
Package setuptools conflicts for:
python=3.8 -> pip -> setuptools
gunicorn==20.1.0 -> setuptools[version='>=3.0']
flask==1.1.2 -> jinja2[version='>=2.10.1'] -> setuptools
if u read the gunicorn section, it says that gunicorn doesn't support python8
- gunicorn==20.1.0 -> python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.9,<3.10.0a0'](>=3.7,<3.8.0a0|>=3.9,<3.10.0a0) only python 3.7 up to and not including 3.8 alpha, and 3.9 up to and not including 3.10 alpha
omaraltayyan
commented
3 years ago i tried installing gunicorn on it's own, same thing happened
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Solving environment: ...working...
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
Building graph of deps: 0%| | 0/6 [00:00<?, ?it/s]
Examining @/linux-64::__glibc==2.28=0: 0%| | 0/6 [00:00<?, ?it/s]
Examining @/linux-64::__unix==0=0: 17%|█▋ | 1/6 [00:00<00:00, 5857.97it/s]
Examining @/linux-64::__archspec==1=x86_64: 33%|███â–ژ | 2/6 [00:00<00:00, 6927.01it/s]
Examining gunicorn==20.1.0: 50%|█████ | 3/6 [00:00<00:00, 7593.79it/s]
Examining @/linux-64::__linux==4.19.121=0: 67%|██████▋ | 4/6 [00:00<00:00, 37.25it/s]
Examining @/linux-64::__linux==4.19.121=0: 83%|████████â–ژ | 5/6 [00:00<00:00, 46.50it/s]
Examining python=3.8: 83%|████████â–ژ | 5/6 [00:00<00:00, 46.50it/s]
Determining conflicts: 0%| | 0/6 [00:00<?, ?it/s]
Examining conflict for gunicorn python: 0%| | 0/6 [00:00<?, ?it/s]
failed
UnsatisfiableError: The following specifications were found
to be incompatible with the existing python installation in your environment:
Specifications:
- gunicorn==20.1.0 -> python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.9,<3.10.0a0']
Your python: python=3.8
If python is on the left-most side of the chain, that's the version you've asked for.
When python appears to the right, that indicates that the thing on the left is somehow
not available for the python version you are constrained to. Note that conda will not
change your python version to a different minor version unless you explicitly specify
that.You are probably installing it inside an environment that has something incompatible with that build of gunicorn. Try it in a fresh env:
conda create --name TEST gunicorn==20.1.0Here's my docker file, This actually works without throwing errors
FROM python:3.8.9-slim-buster
ENV PYTHONUNBUFFERED 1
ARG MINIFORGE_VERSION=4.10.0-0
ARG TARGETPLATFORM
ENV CONDA_DIR=/opt/conda
ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
ENV PATH=${CONDA_DIR}/bin:${PATH}
RUN apt-get update > /dev/null && \
apt-get install --no-install-recommends --yes \
wget bzip2 ca-certificates \
git > /dev/null && \
apt-get clean && \
rm -rf /var/lib/apt/lists/* && \
wget --no-hsts --quiet https://github.com/conda-forge/miniforge/releases/download/${MINIFORGE_VERSION}/Miniforge3-${MINIFORGE_VERSION}-Linux-${TARGETPLATFORM}.sh -O /tmp/miniforge.sh && \
/bin/bash /tmp/miniforge.sh -b -p ${CONDA_DIR} && \
rm /tmp/miniforge.sh && \
conda clean -tipsy && \
find ${CONDA_DIR} -follow -type f -name '*.a' -delete && \
find ${CONDA_DIR} -follow -type f -name '*.pyc' -delete && \
conda clean -afy && \
echo ". ${CONDA_DIR}/etc/profile.d/conda.sh && conda activate base" >> /etc/skel/.bashrc && \
echo ". ${CONDA_DIR}/etc/profile.d/conda.sh && conda activate base" >> ~/.bashrc
RUN conda create --name TEST gunicorn==20.1.0However just changing the last line to
RUN conda install -y gunicorn==20.1.0Causes the same issue to appear again, what does creating an environment do that's different? does it install its own version of python for example?
This is the error message:
ocefpaf
commented
3 years ago RUN conda install -y gunicorn==20.1.0Causes the same issue to appear again, what does creating an environment do that's different? does it install its own version of python for example?
The main different is that your docker image is probably bringing pre-installed packages that are incompatible with gunicorn. A new env is installing only gunicorn, so no incompatibilities.
omaraltayyan
commented
3 years ago Thanks!!
Issue:
installing gunicorn version 20.1.0 on python 3.8 doesn't work , only version 20.0.4 is working.
if it helps i am using docker image
python:3.8.8-slim-buster, and these are the requirements i am trying to installthis is the error message i receive:
Environment (
conda list):Details about
condaand system (conda info):