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conda-forge / isce3-feedstock

A conda-smithy repository for isce3.
BSD 3-Clause "New" or "Revised" License
2 stars 2 forks source link

ISCE3 build 3 appear broken #33

Closed jhkennedy closed 1 year ago

jhkennedy commented 1 year ago

Solution to issue cannot be found in the documentation.

Issue

ISCE3 build 3, from conda-forge/isce3-feedstock#31, which updated ISCE3 to build against gdal 3.6 appears to be broken and is causing ISCE3 import failures like:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/root/miniconda/envs/RAiDER/lib/python3.10/site-packages/RAiDER/delay.py", line 18, in <module>
    import isce3.ext.isce3 as isce
  File "/root/miniconda/envs/RAiDER/lib/python3.10/site-packages/isce3/__init__.py", line 2, in <module>
    from .ext import extisce3
  File "/root/miniconda/envs/RAiDER/lib/python3.10/site-packages/isce3/ext/__init__.py", line 3, in <module>
    from . import isce3 as extisce3
ImportError: libgdal.so.32: cannot open shared object file: No such file or directory

Exited with code exit status 1

If I instead constrain my conda environment to install isce3==0.8.0=*_2 (build 2), I can import ISCE3 just fine.

Installed packages

# packages in environment at /home/jhkennedy/mambaforge/envs/RAiDER:
#
# Name                    Version                   Build  Channel
_ipython_minor_entry_point 8.7.0                hb6b4a82_0    conda-forge
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
affine                    2.3.1              pyhd8ed1ab_0    conda-forge
aiobotocore               2.4.0              pyhd8ed1ab_0    conda-forge
aiohttp                   3.8.3           py310h5764c6d_1    conda-forge
aioitertools              0.11.0             pyhd8ed1ab_0    conda-forge
aiosignal                 1.3.1              pyhd8ed1ab_0    conda-forge
alsa-lib                  1.2.8                h166bdaf_0    conda-forge
anyio                     3.6.2              pyhd8ed1ab_0    conda-forge
appdirs                   1.4.4              pyh9f0ad1d_0    conda-forge
argon2-cffi               21.3.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0          py310h5764c6d_3    conda-forge
asttokens                 2.2.0              pyhd8ed1ab_0    conda-forge
async-timeout             4.0.2              pyhd8ed1ab_0    conda-forge
atk-1.0                   2.38.0               hd4edc92_1    conda-forge
attr                      2.5.1                h166bdaf_1    conda-forge
attrs                     22.1.0             pyh71513ae_1    conda-forge
autopep8                  2.0.0              pyhd8ed1ab_0    conda-forge
babel                     2.11.0             pyhd8ed1ab_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backoff                   2.2.1              pyhd8ed1ab_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.11.1             pyha770c72_0    conda-forge
binutils                  2.39                 hdd6e379_1    conda-forge
binutils_impl_linux-64    2.39                 he00db2b_1    conda-forge
binutils_linux-64         2.39                h5fc0e48_11    conda-forge
bleach                    5.0.1              pyhd8ed1ab_0    conda-forge
blosc                     1.21.1               h83bc5f7_3    conda-forge
bokeh                     2.4.3              pyhd8ed1ab_3    conda-forge
boost-cpp                 1.78.0               h75c5d50_1    conda-forge
boto3                     1.24.59            pyhd8ed1ab_0    conda-forge
botocore                  1.27.59            pyhd8ed1ab_0    conda-forge
branca                    0.6.0              pyhd8ed1ab_0    conda-forge
brotli                    1.0.9                h166bdaf_8    conda-forge
brotli-bin                1.0.9                h166bdaf_8    conda-forge
brotlipy                  0.7.0           py310h5764c6d_1005    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
c-compiler                1.5.1                h166bdaf_0    conda-forge
ca-certificates           2022.9.24            ha878542_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
cairo                     1.16.0            ha61ee94_1014    conda-forge
cartopy                   0.21.0          py310h83f2385_3    conda-forge
cdsapi                    0.5.1              pyhd8ed1ab_0    conda-forge
certifi                   2022.9.24          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1          py310h255011f_2    conda-forge
cfgrib                    0.9.10.3           pyhd8ed1ab_0    conda-forge
cfitsio                   4.2.0                hd9d235c_0    conda-forge
cftime                    1.6.2           py310hde88566_1    conda-forge
charset-normalizer        2.1.1              pyhd8ed1ab_0    conda-forge
click                     8.1.3           unix_pyhd8ed1ab_2    conda-forge
click-plugins             1.1.1                      py_0    conda-forge
cligj                     0.7.2              pyhd8ed1ab_1    conda-forge
cloudpickle               2.2.0              pyhd8ed1ab_0    conda-forge
cmake                     3.25.1               h816a3e0_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
contourpy                 1.0.6           py310hbf28c38_0    conda-forge
coverage                  6.5.0           py310h5764c6d_1    conda-forge
cryptography              38.0.4          py310h600f1e7_0    conda-forge
curl                      7.86.0               h2283fc2_1    conda-forge
cxx-compiler              1.5.1                h924138e_0    conda-forge
cycler                    0.11.0             pyhd8ed1ab_0    conda-forge
cython                    0.29.32         py310hd8f1fbe_1    conda-forge
cytoolz                   0.12.0          py310h5764c6d_1    conda-forge
dask                      2022.11.1          pyhd8ed1ab_0    conda-forge
dask-core                 2022.11.1          pyhd8ed1ab_0    conda-forge
dbus                      1.13.6               h5008d03_3    conda-forge
debugpy                   1.6.4           py310hd8f1fbe_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
dem_stitcher              2.3.1              pyhd8ed1ab_0    conda-forge
distributed               2022.11.1          pyhd8ed1ab_0    conda-forge
docopt                    0.6.2                      py_1    conda-forge
eccodes                   2.27.0               h164a9dd_0    conda-forge
ecmwf-api-client          1.6.3              pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
exceptiongroup            1.0.4              pyhd8ed1ab_0    conda-forge
executing                 1.2.0              pyhd8ed1ab_0    conda-forge
expat                     2.5.0                h27087fc_0    conda-forge
fftw                      3.3.10          nompi_hf0379b8_106    conda-forge
findlibs                  0.0.2              pyhd8ed1ab_0    conda-forge
fiona                     1.8.22          py310h60a68a4_2    conda-forge
flit-core                 3.8.0              pyhd8ed1ab_0    conda-forge
folium                    0.13.0             pyhd8ed1ab_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.1               hc2a2eb6_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.38.0          py310h5764c6d_1    conda-forge
freeglut                  3.2.2                h9c3ff4c_1    conda-forge
freetype                  2.12.1               hca18f0e_1    conda-forge
freexl                    1.0.6                h166bdaf_1    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
frozenlist                1.3.3           py310h5764c6d_0    conda-forge
fsspec                    2022.11.0          pyhd8ed1ab_0    conda-forge
gcc                       10.4.0              hb92f740_11    conda-forge
gcc_impl_linux-64         10.4.0              h5231bdf_19    conda-forge
gcc_linux-64              10.4.0              h9215b83_11    conda-forge
gdal                      3.5.3           py310he53f9b6_7    conda-forge
gdk-pixbuf                2.42.8               hff1cb4f_1    conda-forge
geopandas                 0.12.1             pyhd8ed1ab_1    conda-forge
geopandas-base            0.12.1             pyha770c72_1    conda-forge
geos                      3.11.1               h27087fc_0    conda-forge
geotiff                   1.7.1                ha76d385_4    conda-forge
gettext                   0.21.1               h27087fc_0    conda-forge
ghostscript               9.54.0               h27087fc_2    conda-forge
giflib                    5.2.1                h36c2ea0_2    conda-forge
glib                      2.74.1               h6239696_1    conda-forge
glib-tools                2.74.1               h6239696_1    conda-forge
graphite2                 1.3.13            h58526e2_1001    conda-forge
graphviz                  6.0.2                h99bc08f_0    conda-forge
gst-plugins-base          1.21.2               h3e40eee_0    conda-forge
gstreamer                 1.21.2               hd4edc92_0    conda-forge
gstreamer-orc             0.4.33               h166bdaf_0    conda-forge
gtk2                      2.24.33              h90689f9_2    conda-forge
gts                       0.7.6                h64030ff_2    conda-forge
gxx                       10.4.0              hb92f740_11    conda-forge
gxx_impl_linux-64         10.4.0              h5231bdf_19    conda-forge
gxx_linux-64              10.4.0              h6e491c6_11    conda-forge
h5netcdf                  1.1.0              pyhd8ed1ab_0    conda-forge
h5py                      3.7.0           nompi_py310h416281c_102    conda-forge
harfbuzz                  5.3.0                h418a68e_0    conda-forge
hdf4                      4.2.15               h9772cbc_5    conda-forge
hdf5                      1.12.2          nompi_h4df4325_100    conda-forge
heapdict                  1.0.1                      py_0    conda-forge
herbie-data               2022.9.0.post1     pyhd8ed1ab_0    conda-forge
icu                       70.1                 h27087fc_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
imagemagick               7.1.0_52        pl5321hc735599_0    conda-forge
importlib-metadata        5.1.0              pyha770c72_0    conda-forge
importlib_metadata        5.1.0                hd8ed1ab_0    conda-forge
importlib_resources       5.10.0             pyhd8ed1ab_0    conda-forge
iniconfig                 1.1.1              pyh9f0ad1d_0    conda-forge
ipykernel                 6.17.1             pyh210e3f2_0    conda-forge
ipython                   8.7.0              pyh41d4057_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                8.0.2              pyhd8ed1ab_1    conda-forge
isce3                     0.8.0           py310h50c1055_3    conda-forge
jack                      1.9.21               h583fa2b_2    conda-forge
jasper                    2.0.33               ha77e612_0    conda-forge
jbig                      2.1               h7f98852_2003    conda-forge
jedi                      0.18.2             pyhd8ed1ab_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
jmespath                  1.0.1              pyhd8ed1ab_0    conda-forge
joblib                    1.2.0              pyhd8ed1ab_0    conda-forge
jpeg                      9e                   h166bdaf_2    conda-forge
json-c                    0.16                 hc379101_0    conda-forge
json5                     0.9.5              pyh9f0ad1d_0    conda-forge
jsonschema                4.17.3             pyhd8ed1ab_0    conda-forge
jupyter                   1.0.0           py310hff52083_7    conda-forge
jupyter_client            7.3.4              pyhd8ed1ab_0    conda-forge
jupyter_console           6.4.4              pyhd8ed1ab_0    conda-forge
jupyter_contrib_core      0.4.0              pyhd8ed1ab_0    conda-forge
jupyter_contrib_nbextensions 0.5.1              pyhd8ed1ab_2    conda-forge
jupyter_core              5.1.0           py310hff52083_0    conda-forge
jupyter_highlight_selected_word 0.2.0           py310hff52083_1005    conda-forge
jupyter_latex_envs        1.4.6           pyhd8ed1ab_1002    conda-forge
jupyter_nbextensions_configurator 0.4.1              pyhd8ed1ab_2    conda-forge
jupyter_server            1.23.3             pyhd8ed1ab_0    conda-forge
jupyterlab                3.5.0              pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
jupyterlab_server         2.16.3             pyhd8ed1ab_0    conda-forge
jupyterlab_widgets        3.0.3              pyhd8ed1ab_0    conda-forge
kealib                    1.5.0                ha7026e8_0    conda-forge
kernel-headers_linux-64   2.6.32              he073ed8_15    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
kiwisolver                1.4.4           py310hbf28c38_1    conda-forge
krb5                      1.19.3               h08a2579_0    conda-forge
lame                      3.100             h166bdaf_1003    conda-forge
lcms2                     2.14                 h6ed2654_0    conda-forge
ld_impl_linux-64          2.39                 hcc3a1bd_1    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libaec                    1.0.6                h9c3ff4c_0    conda-forge
libblas                   3.9.0           16_linux64_openblas    conda-forge
libbrotlicommon           1.0.9                h166bdaf_8    conda-forge
libbrotlidec              1.0.9                h166bdaf_8    conda-forge
libbrotlienc              1.0.9                h166bdaf_8    conda-forge
libcap                    2.66                 ha37c62d_0    conda-forge
libcblas                  3.9.0           16_linux64_openblas    conda-forge
libclang                  15.0.6          default_h2e3cab8_0    conda-forge
libclang13                15.0.6          default_h3a83d3e_0    conda-forge
libcups                   2.3.3                h3e49a29_2    conda-forge
libcurl                   7.86.0               h2283fc2_1    conda-forge
libdap4                   3.20.6               hd7c4107_2    conda-forge
libdb                     6.2.32               h9c3ff4c_0    conda-forge
libdeflate                1.14                 h166bdaf_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libevent                  2.1.10               h28343ad_4    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libflac                   1.4.2                h27087fc_0    conda-forge
libgcc-devel_linux-64     10.4.0              hd38fd1e_19    conda-forge
libgcc-ng                 12.2.0              h65d4601_19    conda-forge
libgcrypt                 1.10.1               h166bdaf_0    conda-forge
libgd                     2.3.3                h18fbbfe_3    conda-forge
libgdal                   3.5.3                hd850ce1_7    conda-forge
libgfortran-ng            12.2.0              h69a702a_19    conda-forge
libgfortran5              12.2.0              h337968e_19    conda-forge
libglib                   2.74.1               h606061b_1    conda-forge
libglu                    9.0.0             he1b5a44_1001    conda-forge
libgomp                   12.2.0              h65d4601_19    conda-forge
libgpg-error              1.45                 hc0c96e0_0    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
libkml                    1.3.0             h37653c0_1015    conda-forge
liblapack                 3.9.0           16_linux64_openblas    conda-forge
libllvm15                 15.0.6               h63197d8_0    conda-forge
libnetcdf                 4.8.1           nompi_h261ec11_106    conda-forge
libnghttp2                1.47.0               hff17c54_1    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libogg                    1.3.4                h7f98852_1    conda-forge
libopenblas               0.3.21          pthreads_h78a6416_3    conda-forge
libopus                   1.3.1                h7f98852_1    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
libpq                     15.1                 h67c24c5_1    conda-forge
librsvg                   2.54.4               h7abd40a_0    conda-forge
librttopo                 1.1.0               ha49c73b_12    conda-forge
libsanitizer              10.4.0              h5246dfb_19    conda-forge
libsndfile                1.1.0                h27087fc_0    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libspatialindex           1.9.3                h9c3ff4c_4    conda-forge
libspatialite             5.0.1               h7c8129e_22    conda-forge
libsqlite                 3.40.0               h753d276_0    conda-forge
libssh2                   1.10.0               hf14f497_3    conda-forge
libstdcxx-devel_linux-64  10.4.0              hd38fd1e_19    conda-forge
libstdcxx-ng              12.2.0              h46fd767_19    conda-forge
libsystemd0               252                  h2a991cd_0    conda-forge
libtiff                   4.4.0                h55922b4_4    conda-forge
libtool                   2.4.6             h9c3ff4c_1008    conda-forge
libudev1                  252                  h166bdaf_0    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libuv                     1.44.2               h166bdaf_0    conda-forge
libvorbis                 1.3.7                h9c3ff4c_0    conda-forge
libwebp                   1.2.4                h522a892_0    conda-forge
libwebp-base              1.2.4                h166bdaf_0    conda-forge
libxcb                    1.13              h7f98852_1004    conda-forge
libxkbcommon              1.0.3                he3ba5ed_0    conda-forge
libxml2                   2.10.3               h7463322_0    conda-forge
libxslt                   1.1.37               h873f0b0_0    conda-forge
libzip                    1.9.2                hc929e4a_1    conda-forge
libzlib                   1.2.13               h166bdaf_4    conda-forge
locket                    1.0.0              pyhd8ed1ab_0    conda-forge
lxml                      4.9.1           py310ha00c094_1    conda-forge
lz4                       4.0.2           py310h5d5e884_0    conda-forge
lz4-c                     1.9.3                h9c3ff4c_1    conda-forge
mapclassify               2.4.3              pyhd8ed1ab_0    conda-forge
markupsafe                2.1.1           py310h5764c6d_2    conda-forge
matplotlib                3.6.2           py310hff52083_0    conda-forge
matplotlib-base           3.6.2           py310h8d5ebf3_0    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
metpy                     1.3.1              pyhd8ed1ab_0    conda-forge
mistune                   2.0.4              pyhd8ed1ab_0    conda-forge
mpg123                    1.30.2               h27087fc_1    conda-forge
msgpack-python            1.0.4           py310hbf28c38_1    conda-forge
multidict                 6.0.2           py310h5764c6d_2    conda-forge
munch                     2.5.0                      py_0    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mysql-common              8.0.31               h26416b9_0    conda-forge
mysql-libs                8.0.31               hbc51c84_0    conda-forge
nbclassic                 0.4.8              pyhd8ed1ab_0    conda-forge
nbclient                  0.7.2              pyhd8ed1ab_0    conda-forge
nbconvert                 7.2.5              pyhd8ed1ab_0    conda-forge
nbconvert-core            7.2.5              pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          7.2.5              pyhd8ed1ab_0    conda-forge
nbformat                  5.7.0              pyhd8ed1ab_0    conda-forge
ncurses                   6.3                  h27087fc_1    conda-forge
nest-asyncio              1.5.6              pyhd8ed1ab_0    conda-forge
netcdf4                   1.6.2           nompi_py310h55e1e36_100    conda-forge
networkx                  2.8.8              pyhd8ed1ab_0    conda-forge
notebook                  6.5.2              pyha770c72_1    conda-forge
notebook-shim             0.2.2              pyhd8ed1ab_0    conda-forge
nspr                      4.35                 h27087fc_0    conda-forge
nss                       3.82                 he02c5a1_0    conda-forge
numpy                     1.23.5          py310h53a5b5f_0    conda-forge
openjpeg                  2.5.0                h7d73246_1    conda-forge
openssl                   3.0.7                h166bdaf_0    conda-forge
packaging                 21.3               pyhd8ed1ab_0    conda-forge
pandas                    1.5.2           py310h769672d_0    conda-forge
pandoc                    2.19.2               h32600fe_1    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
pango                     1.50.12              h382ae3d_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
partd                     1.3.0              pyhd8ed1ab_0    conda-forge
pcre2                     10.40                hc3806b6_0    conda-forge
perl                      5.32.1          2_h7f98852_perl5    conda-forge
pexpect                   4.8.0              pyh1a96a4e_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    9.2.0           py310h454ad03_3    conda-forge
pint                      0.20.1             pyhd8ed1ab_0    conda-forge
pip                       22.3.1             pyhd8ed1ab_0    conda-forge
pixman                    0.40.0               h36c2ea0_0    conda-forge
pkg-config                0.29.2            h36c2ea0_1008    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_0    conda-forge
platformdirs              2.5.2              pyhd8ed1ab_1    conda-forge
pluggy                    1.0.0              pyhd8ed1ab_5    conda-forge
ply                       3.11                       py_1    conda-forge
pooch                     1.6.0              pyhd8ed1ab_0    conda-forge
poppler                   22.11.0              h92391eb_0    conda-forge
poppler-data              0.4.11               hd8ed1ab_0    conda-forge
postgresql                15.1                 ha105346_1    conda-forge
progressbar               2.5                        py_0    conda-forge
proj                      9.1.0                h93bde94_0    conda-forge
prometheus_client         0.15.0             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.33             pyha770c72_0    conda-forge
prompt_toolkit            3.0.33               hd8ed1ab_0    conda-forge
psutil                    5.9.4           py310h5764c6d_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pulseaudio                16.1                 h126f2b6_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
pycodestyle               2.10.0             pyhd8ed1ab_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pydap                     3.3.0              pyhd8ed1ab_0    conda-forge
pygments                  2.13.0             pyhd8ed1ab_0    conda-forge
pygrib                    2.1.4           py310h815554b_6    conda-forge
pyopenssl                 22.1.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.0.9              pyhd8ed1ab_0    conda-forge
pyproj                    3.4.0           py310hb1338dc_2    conda-forge
pyqt                      5.15.7          py310h29803b5_2    conda-forge
pyqt5-sip                 12.11.0         py310hd8f1fbe_2    conda-forge
pyre                      1.11.2          py310h2195f33_3    conda-forge
pyrsistent                0.19.2          py310h5764c6d_0    conda-forge
pyshp                     2.3.1              pyhd8ed1ab_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
pytest                    7.2.0              pyhd8ed1ab_2    conda-forge
pytest-console-scripts    1.3.1              pyhd8ed1ab_0    conda-forge
pytest-cov                4.0.0              pyhd8ed1ab_0    conda-forge
pytest-timeout            2.1.0              pyhd8ed1ab_0    conda-forge
python                    3.10.8          h4a9ceb5_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-eccodes            1.4.2           py310hde88566_1    conda-forge
python-fastjsonschema     2.16.2             pyhd8ed1ab_0    conda-forge
python_abi                3.10                    3_cp310    conda-forge
pytz                      2022.6             pyhd8ed1ab_0    conda-forge
pyyaml                    6.0             py310h5764c6d_5    conda-forge
pyzmq                     24.0.1          py310h330234f_1    conda-forge
qt-main                   5.15.6               he99da89_3    conda-forge
qtconsole                 5.4.0              pyhd8ed1ab_0    conda-forge
qtconsole-base            5.4.0              pyha770c72_0    conda-forge
qtpy                      2.3.0              pyhd8ed1ab_0    conda-forge
raider                    0.1.1.dev134+gbb676c5.d20221202          pypi_0    pypi
rasterio                  1.3.3           py310hb8c21e3_3    conda-forge
readline                  8.1.2                h0f457ee_0    conda-forge
requests                  2.28.1             pyhd8ed1ab_1    conda-forge
rhash                     1.4.3                h166bdaf_0    conda-forge
rtree                     1.0.1           py310hbdcdc62_1    conda-forge
ruamel.yaml               0.17.21         py310h5764c6d_2    conda-forge
ruamel.yaml.clib          0.2.7           py310h5764c6d_0    conda-forge
s3fs                      2022.11.0          pyhd8ed1ab_0    conda-forge
s3transfer                0.6.0              pyhd8ed1ab_0    conda-forge
scikit-learn              1.1.3           py310h0c3af53_1    conda-forge
scipy                     1.9.3           py310hdfbd76f_2    conda-forge
send2trash                1.8.0              pyhd8ed1ab_0    conda-forge
setuptools                65.5.1             pyhd8ed1ab_0    conda-forge
setuptools-scm            7.0.5              pyhd8ed1ab_1    conda-forge
setuptools_scm            7.0.5                hd8ed1ab_1    conda-forge
shapely                   1.8.5           py310h5b266fc_2    conda-forge
sip                       6.7.5           py310hd8f1fbe_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
snappy                    1.1.9                hbd366e4_2    conda-forge
sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
snuggs                    1.4.7                      py_0    conda-forge
sortedcontainers          2.4.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.2.post1        pyhd8ed1ab_0    conda-forge
sqlite                    3.40.0               h4ff8645_0    conda-forge
stack_data                0.6.2              pyhd8ed1ab_0    conda-forge
sysroot_linux-64          2.12                he073ed8_15    conda-forge
tblib                     1.7.0              pyhd8ed1ab_0    conda-forge
terminado                 0.17.0             pyh41d4057_0    conda-forge
threadpoolctl             3.1.0              pyh8a188c0_0    conda-forge
tiledb                    2.11.3               h3f4058f_1    conda-forge
tinycss2                  1.2.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
toolz                     0.12.0             pyhd8ed1ab_0    conda-forge
tornado                   6.1             py310h5764c6d_3    conda-forge
tqdm                      4.64.1             pyhd8ed1ab_0    conda-forge
traitlets                 5.6.0              pyhd8ed1ab_0    conda-forge
typing-extensions         4.4.0                hd8ed1ab_0    conda-forge
typing_extensions         4.4.0              pyha770c72_0    conda-forge
tzcode                    2022g                h166bdaf_0    conda-forge
tzdata                    2022g                h191b570_0    conda-forge
unicodedata2              15.0.0          py310h5764c6d_0    conda-forge
urllib3                   1.26.13            pyhd8ed1ab_0    conda-forge
wand                      0.6.10             pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
webob                     1.8.7              pyhd8ed1ab_0    conda-forge
websocket-client          1.4.2              pyhd8ed1ab_0    conda-forge
wheel                     0.38.4             pyhd8ed1ab_0    conda-forge
widgetsnbextension        4.0.3              pyhd8ed1ab_0    conda-forge
wrapt                     1.14.1          py310h5764c6d_1    conda-forge
xarray                    2022.11.0          pyhd8ed1ab_0    conda-forge
xcb-util                  0.4.0                h166bdaf_0    conda-forge
xcb-util-image            0.4.0                h166bdaf_0    conda-forge
xcb-util-keysyms          0.4.0                h166bdaf_0    conda-forge
xcb-util-renderutil       0.3.9                h166bdaf_0    conda-forge
xcb-util-wm               0.4.1                h166bdaf_0    conda-forge
xerces-c                  3.2.4                h55805fa_1    conda-forge
xorg-fixesproto           5.0               h7f98852_1002    conda-forge
xorg-inputproto           2.3.2             h7f98852_1002    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.7.2                h7f98852_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h7f98852_1    conda-forge
xorg-libxfixes            5.0.3             h7f98852_1004    conda-forge
xorg-libxi                1.7.10               h7f98852_0    conda-forge
xorg-libxrender           0.9.10            h7f98852_1003    conda-forge
xorg-libxt                1.2.1                h7f98852_2    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xyzservices               2022.9.0           pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yamale                    4.0.4              pyh6c4a22f_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
yarl                      1.8.1           py310h5764c6d_0    conda-forge
zeromq                    4.3.4                h9c3ff4c_1    conda-forge
zict                      2.2.0              pyhd8ed1ab_0    conda-forge
zipp                      3.11.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               h166bdaf_4    conda-forge
zstd                      1.5.2                h6239696_4    conda-forge

Environment info

active environment : RAiDER
    active env location : /home/jhkennedy/mambaforge/envs/RAiDER
            shell level : 1
       user config file : /home/jhkennedy/.condarc
 populated config files : /home/jhkennedy/mambaforge/.condarc
                          /home/jhkennedy/.condarc
          conda version : 22.9.0
    conda-build version : not installed
         python version : 3.10.6.final.0
       virtual packages : __linux=5.15.0=0
                          __glibc=2.35=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /home/jhkennedy/mambaforge  (writable)
      conda av data dir : /home/jhkennedy/mambaforge/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/jhkennedy/mambaforge/pkgs
                          /home/jhkennedy/.conda/pkgs
       envs directories : /home/jhkennedy/mambaforge/envs
                          /home/jhkennedy/.conda/envs
               platform : linux-64
             user-agent : conda/22.9.0 requests/2.28.1 CPython/3.10.6 Linux/5.15.0-52-generic ubuntu/22.04.1 glibc/2.35
                UID:GID : 1000:1000
             netrc file : /home/jhkennedy/.netrc
           offline mode : False
jhkennedy commented 1 year ago

Note: We noticed this in dbekaert/RAiDER#422

jhkennedy commented 1 year ago

I suspect this is due to dropping libgdal from the runtime requirements and so ISCE3 happily installs with any libgdal in the environment. The env. I'm creating ends up with libgdal=3.5.3 but build 3 is built against libgdal=3.6.0.

rtburns-jpl commented 1 year ago

Oh, thanks for reporting - I removed libgdal from the runtime reqs based on https://github.com/conda-forge/isce2-feedstock/commit/a65cc0a66eef2dca51a9ebef56884996284ecc05, since it should be auto-propagated from the host requirements. I didn't realize that we hadn't listed it in isce3's host requirements! Should be a quick fix.

rtburns-jpl commented 1 year ago

I'm going to sleep but the linked PR will automerge if it passes CI. Let me know if that new build fixes the issue for you.

jhkennedy commented 1 year ago

@rtburns-jpl Thanks! I think that solves it for build 4!

But I'm still having a bit of trouble: https://dev.azure.com/conda-forge/feedstock-builds/_build/results?buildId=622609&view=logs&j=517fe804-fa30-5dc2-1413-330699242c05&t=c10fa5f2-fdf6-5338-3bdb-c4bea7c23412&l=695

I am correctly not pulling build 4 into my environment (which ends up needing gdal 3.5.3), however build 3 is still propagating in since it think's it's compatible w gdal 3.5.3, so I'll have to restrict to build 2. Might need to remove build 3, or patch the build 3 metadata: https://conda-forge.org/docs/maintainer/updating_pkgs.html#removing-broken-packages

rtburns-jpl commented 1 year ago

Okay, the broken builds have been removed, and there's also a new 0.9.0 release if you'd like to update. Let me know if anything is still causing issues.

jhkennedy commented 1 year ago

@rtburns-jpl thanks! Everything seems to be working well, and upgrading to 0.9.0 also went smoothly. :beers:

rtburns-jpl commented 1 year ago

Great! I'll go ahead and close this issue, but feel free to reopen or open a new one if anything else pops up.