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conda-forge / jaxlib-feedstock

A conda-smithy repository for jaxlib.
BSD 3-Clause "New" or "Revised" License
16 stars 24 forks source link

import error #70

Closed beckermr closed 2 years ago

beckermr commented 2 years ago

Issue:

I am seeing this issue on import 

ImportError: dlopen(/Users/beckermr/miniconda3/envs/desy6/lib/python3.8/site-packages/jaxlib/xla_extension.so, 2): Symbol not found: __ZN3jax12_GLOBAL__N_121CompiledFunctionCache16kDefaultCapacityE
  Referenced from: /Users/beckermr/miniconda3/envs/desy6/lib/python3.8/site-packages/jaxlib/xla_extension.so
  Expected in: flat namespace
 in /Users/beckermr/miniconda3/envs/desy6/lib/python3.8/site-packages/jaxlib/xla_extension.so


Environment (conda list):

``` $ conda list # packages in environment at /Users/beckermr/miniconda3/envs/desy6: # # Name Version Build Channel absl-py 0.15.0 pyhd8ed1ab_0 conda-forge apipkg 2.0.1 pyhd8ed1ab_0 conda-forge appnope 0.1.2 py38h50d1736_1 conda-forge argon2-cffi 21.1.0 py38h96a0964_0 conda-forge asteval 0.9.23 pyhd8ed1ab_0 conda-forge astropy 4.3.1 py38hbe852b5_1 conda-forge async_generator 1.10 py_0 conda-forge attrs 21.2.0 pyhd8ed1ab_0 conda-forge autoconf 2.69 pl5321hc0e15e3_11 conda-forge automake 1.16.5 pl5321h694c41f_0 conda-forge autopep8 1.6.0 pyhd8ed1ab_0 conda-forge backcall 0.2.0 pyh9f0ad1d_0 conda-forge backports 1.0 py_2 conda-forge backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge blas-devel 3.9.0 12_osx64_openblas conda-forge bleach 4.1.0 pyhd8ed1ab_0 conda-forge blosc 1.21.0 he49afe7_0 conda-forge bokeh 2.4.1 py38h50d1736_1 conda-forge brotlipy 0.7.0 py38h96a0964_1001 conda-forge bzip2 1.0.8 h0d85af4_4 conda-forge c-ares 1.18.1 h0d85af4_0 conda-forge c-compiler 1.3.0 h0d85af4_0 conda-forge ca-certificates 2021.10.8 h033912b_0 conda-forge cached-property 1.5.2 hd8ed1ab_1 conda-forge cached_property 1.5.2 pyha770c72_1 conda-forge cachetools 4.2.4 pyhd8ed1ab_0 conda-forge cartopy 0.20.1 py38hda056e9_2 conda-forge cctools 949.0.1 hd9211c8_21 conda-forge cctools_osx-64 949.0.1 h6407bdd_21 conda-forge certifi 2021.10.8 py38h50d1736_1 conda-forge cffi 1.14.6 py38h1a44b6c_1 conda-forge cfitsio 3.470 h01dc385_7 conda-forge chardet 4.0.0 py38h50d1736_1 conda-forge charset-normalizer 2.0.0 pyhd8ed1ab_0 conda-forge clang 11.1.0 h694c41f_1 conda-forge clang-11 11.1.0 default_he082bbe_1 conda-forge clang_osx-64 11.1.0 hb91bd55_3 conda-forge clangxx 11.1.0 default_he082bbe_1 conda-forge clangxx_osx-64 11.1.0 h7e1b574_3 conda-forge click 8.0.3 py38h50d1736_0 conda-forge cloudpickle 2.0.0 pyhd8ed1ab_0 conda-forge colorama 0.4.4 pyh9f0ad1d_0 conda-forge compiler-rt 11.1.0 h654b07c_0 conda-forge compiler-rt_osx-64 11.1.0 h8c5fa43_0 conda-forge compilers 1.3.0 h694c41f_0 conda-forge coverage 6.0.2 py38h96a0964_0 conda-forge cryptography 35.0.0 py38h56c4533_1 conda-forge curl 7.79.1 hf45b732_1 conda-forge cx_oracle 8.2.1 py38h96a0964_0 conda-forge cxx-compiler 1.3.0 h940c156_0 conda-forge cycler 0.11.0 pyhd8ed1ab_0 conda-forge cytoolz 0.11.0 py38h96a0964_3 conda-forge dask 2021.10.0 pyhd8ed1ab_0 conda-forge dask-core 2021.10.0 pyhd8ed1ab_0 conda-forge dbus 1.13.6 ha13b53f_2 conda-forge debugpy 1.4.1 py38ha048514_0 conda-forge decorator 5.1.0 pyhd8ed1ab_0 conda-forge defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge des-desmeds 0.9.12 py38h50d1736_0 conda-forge des-easyaccess 1.4.7 py38h32f6830_3 conda-forge des-pizza-cutter 0.4.8 py38h50d1736_0 conda-forge des-pizza-cutter-metadetect 0.4.9 py38h50d1736_0 conda-forge des-sxdes 0.2.0 pyhd8ed1ab_0 conda-forge des-y6utils 0.1.dev1+g0902119 dev_0 distributed 2021.10.0 py38h50d1736_0 conda-forge eigen 3.4.0 h940c156_0 conda-forge emcee 3.1.1 pyh8a188c0_0 conda-forge entrypoints 0.3 py38h32f6830_1002 conda-forge ephem 4.1 py38h96a0964_0 conda-forge esutil 0.6.8 py38h1f261ad_0 conda-forge execnet 1.9.0 pyhd8ed1ab_0 conda-forge expat 2.4.1 he49afe7_0 conda-forge fancycompleter 0.9.1 py38h50d1736_1002 conda-forge fftw 3.3.10 nompi_h4024a70_101 conda-forge fitsio 1.1.5 py38hf771872_0 conda-forge flake8 3.9.2 pyhd8ed1ab_0 conda-forge flaky 3.7.0 pyh9f0ad1d_0 conda-forge fortran-compiler 1.3.0 h6818c3e_0 conda-forge freetype 2.10.4 h4cff582_1 conda-forge fsspec 2021.10.1 pyhd8ed1ab_0 conda-forge future 0.18.2 py38h50d1736_3 conda-forge galsim 2.3.3 py38hb3169c0_0 conda-forge geos 3.10.0 he49afe7_0 conda-forge gettext 0.19.8.1 hd1a6beb_1008 conda-forge gfortran 9.3.0 h768ea0c_14 conda-forge gfortran_impl_osx-64 9.3.0 h9cc0e5e_23 conda-forge gfortran_osx-64 9.3.0 h18f7dce_14 conda-forge glib 2.70.0 hcf210ce_1 conda-forge glib-tools 2.70.0 hcf210ce_1 conda-forge gmp 6.2.1 h2e338ed_0 conda-forge gnureadline 8.0.0 py38h4d0b108_1 conda-forge h5py 3.4.0 nompi_py38h9f21798_101 conda-forge hdf5 1.12.1 nompi_h2f0ef1a_101 conda-forge healpy 1.15.0 py38hf54a6e8_2 conda-forge healsparse 1.4.0 pyhd8ed1ab_0 conda-forge heapdict 1.0.1 py_0 conda-forge hexalattice 1.1.0 pyh59e0f4d_0 conda-forge hilbertcurve 2.0.5 pyhd8ed1ab_0 conda-forge icu 68.2 he49afe7_0 conda-forge idna 3.1 pyhd3deb0d_0 conda-forge iminuit 2.8.4 py38ha048514_0 conda-forge importlib-metadata 4.8.1 py38h50d1736_0 conda-forge importlib_metadata 4.8.1 hd8ed1ab_0 conda-forge iniconfig 1.1.1 pyh9f0ad1d_0 conda-forge ipdb 0.13.9 pyhd8ed1ab_0 conda-forge ipykernel 6.4.2 py38h5fd9f69_0 conda-forge ipython 7.28.0 py38h5fd9f69_0 conda-forge ipython_genutils 0.2.0 py_1 conda-forge ipywidgets 7.6.5 pyhd8ed1ab_0 conda-forge isl 0.22.1 hb1e8313_2 conda-forge jax 0.2.24 pyhd8ed1ab_0 conda-forge jaxlib 0.1.73 py38h25821e9_0 conda-forge jbig 2.1 h0d85af4_2003 conda-forge jedi 0.18.0 py38h50d1736_2 conda-forge jinja2 3.0.2 pyhd8ed1ab_0 conda-forge joblib 1.1.0 pyhd8ed1ab_0 conda-forge jpeg 9d hbcb3906_0 conda-forge jsonschema 4.1.2 pyhd8ed1ab_0 conda-forge jupyter 1.0.0 py38h50d1736_6 conda-forge jupyter_client 7.0.6 pyhd8ed1ab_0 conda-forge jupyter_console 6.4.0 pyhd8ed1ab_0 conda-forge jupyter_contrib_core 0.3.3 py_2 conda-forge jupyter_contrib_nbextensions 0.5.1 py38h32f6830_1 conda-forge jupyter_core 4.9.1 py38h50d1736_0 conda-forge jupyter_highlight_selected_word 0.2.0 py38h50d1736_1002 conda-forge jupyter_latex_envs 1.4.6 py38h50d1736_1001 conda-forge jupyter_nbextensions_configurator 0.4.1 py38h50d1736_2 conda-forge jupyterlab_pygments 0.1.2 pyh9f0ad1d_0 conda-forge jupyterlab_widgets 1.0.2 pyhd8ed1ab_0 conda-forge kiwisolver 1.3.2 py38h12bbefe_0 conda-forge krb5 1.19.2 hcfbf3a7_2 conda-forge lcms2 2.12 h577c468_0 conda-forge ld64 530 hd2e7500_21 conda-forge ld64_osx-64 530 he8994da_21 conda-forge ldid 2.1.2 h6a69015_3 conda-forge lerc 3.0 he49afe7_0 conda-forge libblas 3.9.0 12_osx64_openblas conda-forge libcblas 3.9.0 12_osx64_openblas conda-forge libclang 11.1.0 default_he082bbe_1 conda-forge libclang-cpp11.1 11.1.0 default_he082bbe_1 conda-forge libcurl 7.79.1 hf45b732_1 conda-forge libcxx 12.0.1 habf9029_0 conda-forge libdeflate 1.8 h0d85af4_0 conda-forge libedit 3.1.20191231 h0678c8f_2 conda-forge libev 4.33 haf1e3a3_1 conda-forge libffi 3.4.2 he49afe7_4 conda-forge libgfortran 5.0.0 9_3_0_h6c81a4c_23 conda-forge libgfortran-devel_osx-64 9.3.0 h6c81a4c_23 conda-forge libgfortran5 9.3.0 h6c81a4c_23 conda-forge libglib 2.70.0 hf1fb8c0_1 conda-forge libiconv 1.16 haf1e3a3_0 conda-forge liblapack 3.9.0 12_osx64_openblas conda-forge liblapacke 3.9.0 12_osx64_openblas conda-forge libllvm10 10.0.1 h009f743_3 conda-forge libllvm11 11.1.0 hd011deb_2 conda-forge libllvm8 8.0.1 h770b8ee_0 conda-forge libllvm9 9.0.1 default_h2671707_4 conda-forge libnghttp2 1.43.0 h6f36284_1 conda-forge libopenblas 0.3.18 openmp_h3351f45_0 conda-forge libpng 1.6.37 h7cec526_2 conda-forge libpq 13.3 hea3049e_1 conda-forge libsodium 1.0.18 hbcb3906_1 conda-forge libssh2 1.10.0 h52ee1ee_2 conda-forge libtiff 4.3.0 hd146c10_2 conda-forge libtool 2.4.6 he49afe7_1008 conda-forge libwebp-base 1.2.1 h0d85af4_0 conda-forge libxml2 2.9.12 h93ec3fd_0 conda-forge libxslt 1.1.33 h5739fc3_2 conda-forge libzlib 1.2.11 h9173be1_1013 conda-forge llvm-openmp 12.0.1 hda6cdc1_1 conda-forge llvm-tools 11.1.0 hd011deb_2 conda-forge llvmlite 0.36.0 py38h872f124_0 conda-forge lmfit 1.0.3 pyhd8ed1ab_0 conda-forge locket 0.2.0 py_2 conda-forge loky 3.0.0 pyhd8ed1ab_0 conda-forge lsstdesc.coord 1.2.2 py38h12bbefe_0 conda-forge lxml 4.6.3 py38h6ea4786_0 conda-forge lz4-c 1.9.3 he49afe7_1 conda-forge m4 1.4.18 haf1e3a3_1001 conda-forge markupsafe 2.0.1 py38h96a0964_0 conda-forge matplotlib 3.4.3 py38h50d1736_1 conda-forge matplotlib-base 3.4.3 py38hc7d2367_1 conda-forge matplotlib-inline 0.1.3 pyhd8ed1ab_0 conda-forge mccabe 0.6.1 py_1 conda-forge meds 0.9.14 py38h0793694_0 conda-forge metadetect 0.3.11 pyhd8ed1ab_1 conda-forge mistune 0.8.4 py38h96a0964_1004 conda-forge mock 4.0.3 py38h50d1736_1 conda-forge more-itertools 8.10.0 pyhd8ed1ab_0 conda-forge mpc 1.2.1 hbb51d92_0 conda-forge mpfr 4.1.0 h0f52abe_1 conda-forge mpi 1.0 openmpi conda-forge mpi4py 3.1.1 py38h1087cf1_0 conda-forge msgpack-python 1.0.2 py38h12bbefe_1 conda-forge mysql-common 8.0.27 h694c41f_1 conda-forge mysql-libs 8.0.27 h115446f_1 conda-forge nb_conda_kernels 2.3.1 py38h50d1736_0 conda-forge nbclient 0.5.4 pyhd8ed1ab_0 conda-forge nbconvert 6.2.0 py38h50d1736_0 conda-forge nbformat 5.1.3 pyhd8ed1ab_0 conda-forge ncurses 6.2 h2e338ed_4 conda-forge nest-asyncio 1.5.1 pyhd8ed1ab_0 conda-forge ngmix 2.0.3 dev_0 nose 1.3.7 py38h32f6830_1004 conda-forge notebook 6.4.5 pyha770c72_0 conda-forge nspr 4.32 hcd9eead_0 conda-forge nss 3.71 h31e2bf1_0 conda-forge numba 0.53.1 py38h5b9a75a_1 conda-forge numexpr 2.7.3 py38ha53d530_0 conda-forge numpy 1.21.3 py38h49b9922_0 conda-forge olefile 0.46 pyh9f0ad1d_1 conda-forge openblas 0.3.18 openmp_h12da7db_0 conda-forge openjpeg 2.4.0 h6e7aa92_1 conda-forge openmpi 4.1.1 hd3cd54c_0 conda-forge openssl 1.1.1l h0d85af4_0 conda-forge opt_einsum 3.3.0 pyhd8ed1ab_1 conda-forge oracle-instant-client 19.8.0.0.0 h694c41f_1 conda-forge packaging 21.2 pyhd8ed1ab_1 conda-forge pandas 1.3.4 py38ha53d530_0 conda-forge pandoc 2.15 h0d85af4_0 conda-forge pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge parso 0.8.2 pyhd8ed1ab_0 conda-forge partd 1.2.0 pyhd8ed1ab_0 conda-forge patsy 0.5.2 pyhd8ed1ab_0 conda-forge pcre 8.45 he49afe7_0 conda-forge perl 5.32.1 1_h0d85af4_perl5 conda-forge pexpect 4.8.0 py38h32f6830_1 conda-forge pickleshare 0.7.5 py38h32f6830_1002 conda-forge piff 1.1.0 py38h50d1736_2 conda-forge pillow 8.3.2 py38hee640a0_0 conda-forge pip 21.3.1 pyhd8ed1ab_0 conda-forge pixmappy 1.0.0 pyh9f0ad1d_0 conda-forge pizza-cutter-sims 0.1.0 dev_0 pluggy 1.0.0 py38h50d1736_1 conda-forge proj 8.1.1 h1512c50_2 conda-forge prometheus_client 0.12.0 pyhd8ed1ab_0 conda-forge prompt-toolkit 3.0.21 pyha770c72_0 conda-forge prompt_toolkit 3.0.21 hd8ed1ab_0 conda-forge proplot 0.9.5 pyhd8ed1ab_0 conda-forge psfex 0.4.1 py38hc7193ba_2 conda-forge psutil 5.8.0 py38h96a0964_1 conda-forge ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge py 1.10.0 pyhd3deb0d_0 conda-forge pybind11 2.8.1 py38h12bbefe_0 conda-forge pybind11-global 2.8.1 py38h12bbefe_0 conda-forge pycodestyle 2.7.0 pyhd8ed1ab_0 conda-forge pycodestyle-magic 0.5 pypi_0 pypi pycparser 2.20 pyh9f0ad1d_2 conda-forge pyerfa 2.0.0 py38h0793694_0 conda-forge pyflakes 2.3.1 pyhd8ed1ab_0 conda-forge pygments 2.10.0 pyhd8ed1ab_0 conda-forge pyopenssl 21.0.0 pyhd8ed1ab_0 conda-forge pyparsing 2.4.7 pyhd8ed1ab_1 conda-forge pyproj 3.2.1 py38h665cf17_2 conda-forge pyqt 5.12.3 py38h50d1736_7 conda-forge pyqt-impl 5.12.3 py38h721a93c_7 conda-forge pyqt5-sip 4.19.18 py38h5745d40_7 conda-forge pyqtchart 5.12 py38h721a93c_7 conda-forge pyqtwebengine 5.12.1 py38h721a93c_7 conda-forge pyrepl 0.9.0 py38h96a0964_3 conda-forge pyrsistent 0.17.3 py38h96a0964_2 conda-forge pyshp 2.1.3 pyh44b312d_0 conda-forge pysocks 1.7.1 py38h50d1736_3 conda-forge pytables 3.6.1 py38h5215406_4 conda-forge pytest 6.2.5 py38h50d1736_0 conda-forge pytest-cov 3.0.0 pyhd8ed1ab_0 conda-forge pytest-forked 1.3.0 pyhd3deb0d_0 conda-forge pytest-runner 5.3.1 pyhd8ed1ab_0 conda-forge pytest-xdist 2.4.0 pyhd8ed1ab_0 conda-forge python 3.8.12 h17280f6_2_cpython conda-forge python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge python-flatbuffers 2.0 pyhd8ed1ab_0 conda-forge python_abi 3.8 2_cp38 conda-forge pytz 2021.3 pyhd8ed1ab_0 conda-forge pyyaml 6.0 py38h96a0964_0 conda-forge pyzmq 22.3.0 py38hd3b92b6_0 conda-forge qt 5.12.9 h126340a_4 conda-forge qtconsole 5.1.1 pyhd8ed1ab_0 conda-forge qtpy 1.11.2 pyhd8ed1ab_0 conda-forge readline 8.1 h05e3726_0 conda-forge requests 2.26.0 pyhd8ed1ab_0 conda-forge schwimmbad 0.3.2 py38h50d1736_0 conda-forge scikit-learn 1.0.1 py38h1021539_1 conda-forge scipy 1.7.1 py38hd329d04_0 conda-forge seaborn 0.11.2 hd8ed1ab_0 conda-forge seaborn-base 0.11.2 pyhd8ed1ab_0 conda-forge send2trash 1.8.0 pyhd8ed1ab_0 conda-forge sep 1.2.0 py38h0793694_0 conda-forge setuptools 58.3.0 py38h50d1736_0 conda-forge setuptools-scm 6.3.2 pyhd8ed1ab_0 conda-forge setuptools_scm 6.3.2 hd8ed1ab_0 conda-forge setuptools_scm_git_archive 1.1 py_0 conda-forge shapely 1.8.0 py38h3d97504_1 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge sqlite 3.36.0 h23a322b_2 conda-forge statsmodels 0.13.0 py38hbe852b5_0 conda-forge tapi 1100.0.11 h9ce4665_0 conda-forge tblib 1.7.0 pyhd8ed1ab_0 conda-forge termcolor 1.1.0 py_2 conda-forge terminado 0.12.1 py38h50d1736_0 conda-forge testpath 0.5.0 pyhd8ed1ab_0 conda-forge threadpoolctl 3.0.0 pyh8a188c0_0 conda-forge tk 8.6.11 h5dbffcc_1 conda-forge toml 0.10.2 pyhd8ed1ab_0 conda-forge tomli 1.2.2 pyhd8ed1ab_0 conda-forge toolz 0.11.1 py_0 conda-forge tornado 6.1 py38h96a0964_1 conda-forge tqdm 4.62.3 pyhd8ed1ab_0 conda-forge traitlets 5.1.1 pyhd8ed1ab_0 conda-forge treecorr 4.2.6 py38hffa2396_0 conda-forge treegp 0.6.0 pyhd8ed1ab_0 conda-forge typing_extensions 3.10.0.2 pyha770c72_0 conda-forge uncertainties 3.1.6 pyhd8ed1ab_0 conda-forge unzip 6.0 hbcf498f_2 conda-forge urllib3 1.26.7 pyhd8ed1ab_0 conda-forge wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge webencodings 0.5.1 py_1 conda-forge wheel 0.37.0 pyhd8ed1ab_1 conda-forge widgetsnbextension 3.5.2 py38h50d1736_0 conda-forge wmctrl 0.4 pyhd8ed1ab_0 conda-forge xz 5.2.5 haf1e3a3_1 conda-forge yaml 0.2.5 haf1e3a3_0 conda-forge zeromq 4.3.4 he49afe7_1 conda-forge zict 2.0.0 py_0 conda-forge zipp 3.6.0 pyhd8ed1ab_0 conda-forge zlib 1.2.11 h9173be1_1013 conda-forge zstd 1.5.0 h582d3a0_0 conda-forge ```


Details about conda and system ( conda info ):

``` $ conda info active environment : desy6 active env location : /Users/beckermr/miniconda3/envs/desy6 shell level : 2 user config file : /Users/beckermr/.condarc populated config files : /Users/beckermr/.condarc conda version : 4.10.3 conda-build version : 3.21.4 python version : 3.8.12.final.0 virtual packages : __osx=10.14.6=0 __unix=0=0 __archspec=1=skylake base environment : /Users/beckermr/miniconda3 (writable) conda av data dir : /Users/beckermr/miniconda3/etc/conda conda av metadata url : None channel URLs : https://conda.anaconda.org/conda-forge/osx-64 https://conda.anaconda.org/conda-forge/noarch https://repo.anaconda.com/pkgs/main/osx-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/osx-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /Users/beckermr/miniconda3/pkgs /Users/beckermr/.conda/pkgs envs directories : /Users/beckermr/miniconda3/envs /Users/beckermr/.conda/envs platform : osx-64 user-agent : conda/4.10.3 requests/2.26.0 CPython/3.8.12 Darwin/18.7.0 OSX/10.14.6 UID:GID : 501:20 netrc file : /Users/beckermr/.netrc offline mode : False ```