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conda-forge / juliaup-feedstock

A conda-smithy repository for juliaup.
BSD 3-Clause "New" or "Revised" License
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`juliaup` installs to root `$CONDA_PREFIX` even when in different environment. #62

Open jmuchovej opened 1 year ago

jmuchovej commented 1 year ago

Solution to issue cannot be found in the documentation.

Issue

Hi! Thanks providing this feedstock! I was wondering if it's possible for juliaup to actually respect the environment prefix?

e.g., if I install juliaup on my base environment and in another, say algorithms-of-the-mind, when I'm using the algorithms-of-the-mind environment and run the following snippet, I get the following output:

$ julia -E "println(Sys.BINDIR)"
/Users/john/.local/conda/lib/julia/juliaup/julia-1.9.3+0.aarch64.apple.darwin14/bin

This is certainly sensible for juliaup in base, but if I'm installing juliaup in a separate environment, it seems like a fair assumption that I don't necessarily care to have package data shared – but most importantly (imo), if I set 1.9.3 as the default in algorithms-of-the-mind, it also sets 1.9.3 as the default in base. Of course, one would modify the default Julia being used, but that's not always feasible (particularly if using shebang scripts or autogenerating ipykernels).

Installed packages

# packages in environment at /Users/john/.local/conda/envs/algorithms-of-the-mind:
#
# Name                    Version                   Build  Channel
alembic                   1.12.0             pyhd8ed1ab_0    conda-forge
anyio                     4.0.0              pyhd8ed1ab_0    conda-forge
appnope                   0.1.3              pyhd8ed1ab_0    conda-forge
argon2-cffi               23.1.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0          py311he2be06e_3    conda-forge
arrow                     1.2.3              pyhd8ed1ab_0    conda-forge
asttokens                 2.4.0              pyhd8ed1ab_0    conda-forge
async-lru                 2.0.4              pyhd8ed1ab_0    conda-forge
attrs                     23.1.0             pyh71513ae_1    conda-forge
babel                     2.12.1             pyhd8ed1ab_1    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.5              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.12.2             pyha770c72_0    conda-forge
bleach                    6.0.0              pyhd8ed1ab_0    conda-forge
brotli-python             1.1.0           py311ha891d26_0    conda-forge
bzip2                     1.0.8                h3422bc3_4    conda-forge
ca-certificates           2023.7.22            hf0a4a13_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
certifi                   2023.7.22          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1          py311hae827db_3    conda-forge
charset-normalizer        3.2.0              pyhd8ed1ab_0    conda-forge
comm                      0.1.4              pyhd8ed1ab_0    conda-forge
debugpy                   1.8.0           py311ha891d26_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
exceptiongroup            1.1.3              pyhd8ed1ab_0    conda-forge
executing                 1.2.0              pyhd8ed1ab_0    conda-forge
fqdn                      1.5.1              pyhd8ed1ab_0    conda-forge
greenlet                  2.0.2           py311ha891d26_1    conda-forge
icu                       72.1                 he12128b_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
importlib-metadata        6.8.0              pyha770c72_0    conda-forge
importlib_metadata        6.8.0                hd8ed1ab_0    conda-forge
importlib_resources       6.0.1              pyhd8ed1ab_0    conda-forge
ipykernel                 6.25.2             pyh1050b4e_0    conda-forge
ipython                   8.15.0             pyh31c8845_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                8.1.1              pyhd8ed1ab_0    conda-forge
isoduration               20.11.0            pyhd8ed1ab_0    conda-forge
jedi                      0.19.0             pyhd8ed1ab_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
json5                     0.9.14             pyhd8ed1ab_0    conda-forge
jsonpointer               2.4             py311h267d04e_2    conda-forge
jsonschema                4.19.0             pyhd8ed1ab_1    conda-forge
jsonschema-specifications 2023.7.1           pyhd8ed1ab_0    conda-forge
jsonschema-with-format-nongpl 4.19.0             pyhd8ed1ab_1    conda-forge
juliaup                   1.11.15              h69fbcac_0    conda-forge
jupyter                   1.0.0             pyhd8ed1ab_10    conda-forge
jupyter-lsp               2.2.0              pyhd8ed1ab_0    conda-forge
jupyter_client            8.3.1              pyhd8ed1ab_0    conda-forge
jupyter_console           6.6.3              pyhd8ed1ab_0    conda-forge
jupyter_core              5.3.1           py311h267d04e_0    conda-forge
jupyter_events            0.7.0              pyhd8ed1ab_2    conda-forge
jupyter_server            2.7.3              pyhd8ed1ab_0    conda-forge
jupyter_server_terminals  0.4.4              pyhd8ed1ab_1    conda-forge
jupyterlab                4.0.6              pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
jupyterlab_server         2.25.0             pyhd8ed1ab_0    conda-forge
jupyterlab_widgets        3.0.9              pyhd8ed1ab_0    conda-forge
libblas                   3.9.0           18_osxarm64_openblas    conda-forge
libcblas                  3.9.0           18_osxarm64_openblas    conda-forge
libcxx                    16.0.6               h4653b0c_0    conda-forge
libexpat                  2.5.0                hb7217d7_1    conda-forge
libffi                    3.4.2                h3422bc3_5    conda-forge
libgfortran               5.0.0           13_2_0_hd922786_1    conda-forge
libgfortran5              13.2.0               hf226fd6_1    conda-forge
liblapack                 3.9.0           18_osxarm64_openblas    conda-forge
libopenblas               0.3.24          openmp_hd76b1f2_0    conda-forge
libsodium                 1.0.18               h27ca646_1    conda-forge
libsqlite                 3.43.0               hb31c410_0    conda-forge
libuv                     1.46.0               hb547adb_0    conda-forge
libzlib                   1.2.13               h53f4e23_5    conda-forge
llvm-openmp               16.0.6               h1c12783_0    conda-forge
mako                      1.2.4              pyhd8ed1ab_0    conda-forge
markupsafe                2.1.3           py311heffc1b2_0    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
mistune                   3.0.1              pyhd8ed1ab_0    conda-forge
nbclient                  0.8.0              pyhd8ed1ab_0    conda-forge
nbconvert                 7.8.0              pyhd8ed1ab_0    conda-forge
nbconvert-core            7.8.0              pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          7.8.0              pyhd8ed1ab_0    conda-forge
nbformat                  5.9.2              pyhd8ed1ab_0    conda-forge
nbgrader                  0.9.1              pyhd8ed1ab_0    conda-forge
ncurses                   6.4                  h7ea286d_0    conda-forge
nest-asyncio              1.5.6              pyhd8ed1ab_0    conda-forge
nodejs                    18.17.1              ha2ed473_0    conda-forge
notebook                  7.0.3              pyhd8ed1ab_0    conda-forge
notebook-shim             0.2.3              pyhd8ed1ab_0    conda-forge
numpy                     1.26.0          py311hb8f3215_0    conda-forge
openssl                   3.1.3                h53f4e23_0    conda-forge
overrides                 7.4.0              pyhd8ed1ab_0    conda-forge
packaging                 23.1               pyhd8ed1ab_0    conda-forge
pandoc                    3.1.3                hce30654_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
pexpect                   4.8.0              pyh1a96a4e_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pip                       23.2.1             pyhd8ed1ab_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_1    conda-forge
platformdirs              3.10.0             pyhd8ed1ab_0    conda-forge
prometheus_client         0.17.1             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.39             pyha770c72_0    conda-forge
prompt_toolkit            3.0.39               hd8ed1ab_0    conda-forge
psutil                    5.9.5           py311he2be06e_0    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pygments                  2.16.1             pyhd8ed1ab_0    conda-forge
pyobjc-core               9.2             py311hb702dc4_0    conda-forge
pyobjc-framework-cocoa    9.2             py311hb702dc4_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
python                    3.11.6          h47c9636_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.18.0             pyhd8ed1ab_0    conda-forge
python-json-logger        2.0.7              pyhd8ed1ab_0    conda-forge
python_abi                3.11                    3_cp311    conda-forge
pytz                      2023.3.post1       pyhd8ed1ab_0    conda-forge
pyyaml                    6.0.1           py311heffc1b2_0    conda-forge
pyzmq                     25.1.1          py311hb1af645_0    conda-forge
qtconsole-base            5.4.4              pyha770c72_0    conda-forge
qtpy                      2.4.0              pyhd8ed1ab_0    conda-forge
rapidfuzz                 3.2.0           py311ha891d26_0    conda-forge
readline                  8.2                  h92ec313_1    conda-forge
referencing               0.30.2             pyhd8ed1ab_0    conda-forge
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
rfc3339-validator         0.1.4              pyhd8ed1ab_0    conda-forge
rfc3986-validator         0.1.1              pyh9f0ad1d_0    conda-forge
rpds-py                   0.10.3          py311h0563b04_0    conda-forge
send2trash                1.8.2              pyhd1c38e8_0    conda-forge
setuptools                68.2.2             pyhd8ed1ab_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.5                pyhd8ed1ab_1    conda-forge
sqlalchemy                2.0.20          py311heffc1b2_0    conda-forge
stack_data                0.6.2              pyhd8ed1ab_0    conda-forge
terminado                 0.17.1             pyhd1c38e8_0    conda-forge
tinycss2                  1.2.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.13               hb31c410_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tornado                   6.3.3           py311heffc1b2_0    conda-forge
traitlets                 5.10.0             pyhd8ed1ab_0    conda-forge
typing-extensions         4.8.0                hd8ed1ab_0    conda-forge
typing_extensions         4.8.0              pyha770c72_0    conda-forge
typing_utils              0.1.0              pyhd8ed1ab_0    conda-forge
tzdata                    2023c                h71feb2d_0    conda-forge
uri-template              1.3.0              pyhd8ed1ab_0    conda-forge
urllib3                   2.0.4              pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.6              pyhd8ed1ab_0    conda-forge
webcolors                 1.13               pyhd8ed1ab_0    conda-forge
webencodings              0.5.1              pyhd8ed1ab_2    conda-forge
websocket-client          1.6.3              pyhd8ed1ab_0    conda-forge
wheel                     0.41.2             pyhd8ed1ab_0    conda-forge
widgetsnbextension        4.0.9              pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h57fd34a_0    conda-forge
yaml                      0.2.5                h3422bc3_2    conda-forge
zeromq                    4.3.4                hbdafb3b_1    conda-forge
zipp                      3.16.2             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               h53f4e23_5    conda-forge

Environment info

active environment : algorithms-of-the-mind
    active env location : /Users/john/.local/conda/envs/algorithms-of-the-mind
            shell level : 2
       user config file : /Users/john/.condarc
 populated config files : /Users/john/.local/conda/.condarc
                          /Users/john/.config/conda/condarc
          conda version : 23.9.0
    conda-build version : not installed
         python version : 3.10.12.final.0
       virtual packages : __archspec=1=arm64
                          __osx=14.0=0
                          __unix=0=0
       base environment : /Users/john/.local/conda  (writable)
      conda av data dir : /Users/john/.local/conda/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/osx-arm64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /Users/john/.local/conda/pkgs
                          /Users/john/.conda/pkgs
       envs directories : /Users/john/.local/conda/envs
                          /Users/john/.conda/envs
               platform : osx-arm64
             user-agent : conda/23.9.0 requests/2.31.0 CPython/3.10.12 Darwin/23.0.0 OSX/14.0 solver/libmamba conda-libmamba-solver/23.9.1 libmambapy/1.5.1
                UID:GID : 502:20
             netrc file : None
           offline mode : False
ngam commented 9 months ago

Hm... I am not sure what to think of this

@mkitti do you have an opinion?

mkitti commented 9 months ago

I'm a little confused, but it seems that juliaup has a central configuration somewhere that is not contained within the environment. My understanding is that there is a JULIAUP_DEPOT_PATH environment variable now that could influence where juliaup configuration is stored and/or managed. https://discourse.julialang.org/t/psa-breaking-change-how-juliaup-interacts-with-julia-depot-path/106497