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conda-forge / miniforge

A conda-forge distribution.
https://conda-forge.org/miniforge
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libmamba Error when extracting package: Failed to create dir #513

Open TPDeramus opened 8 months ago

TPDeramus commented 8 months ago

Solution to issue cannot be found in the documentation.

Issue

Hi.

So sorry to bother you, but nothing jumped out at me on this issue in the current bug reports and documentation.

I'm trying to build a small r environment using a fresh installation of mambaforge on Linux Mint, which works just fine when I use the following:

mamba create -n r-bees r-base r-essentials r-tidyverse
mamba activate r-bees

However, I need the r-arrow package for the environment I am trying to develop, which seems to error during installation regardless of what I try to do.

mamba install -y r-arrow

Looking for: ['r-arrow']

conda-forge/linux-64                                        Using cache
conda-forge/noarch                                          Using cache

Pinned packages:
  - python 3.12.*

Transaction

  Prefix: /home/mrhouse/miniforge3/envs/r-bees

  Updating specs:

   - r-arrow
   - ca-certificates
   - certifi
   - openssl

  Package                  Version  Build             Channel                    Size
───────────────────────────────────────────────────────────────────────────────────────
  Install:
───────────────────────────────────────────────────────────────────────────────────────

  + aws-c-auth               0.7.5  h2acc10b_2        conda-forge/linux-64     Cached
  + aws-c-cal                0.6.9  h0fad3b2_0        conda-forge/linux-64     Cached
  + aws-c-common             0.9.5  hd590300_0        conda-forge/linux-64     Cached
  + aws-c-compression       0.2.17  h3e65c2a_5        conda-forge/linux-64     Cached
  + aws-c-event-stream       0.3.2  hc1d3383_5        conda-forge/linux-64     Cached
  + aws-c-http              0.7.13  h858fa18_9        conda-forge/linux-64     Cached
  + aws-c-io               0.13.35  hf90439a_7        conda-forge/linux-64     Cached
  + aws-c-mqtt               0.9.8  hd23f6f0_1        conda-forge/linux-64     Cached
  + aws-c-s3                0.3.22  h2de862a_1        conda-forge/linux-64     Cached
  + aws-c-sdkutils          0.1.12  h3e65c2a_4        conda-forge/linux-64     Cached
  + aws-checksums           0.1.17  h3e65c2a_4        conda-forge/linux-64     Cached
  + aws-crt-cpp             0.24.4  h233f1e4_5        conda-forge/linux-64     Cached
  + aws-sdk-cpp           1.11.182  h18c0b32_3        conda-forge/linux-64     Cached
  + gflags                   2.2.2  he1b5a44_1004     conda-forge/linux-64     Cached
  + glog                     0.6.0  h6f12383_0        conda-forge/linux-64     Cached
  + libabseil           20230802.1  cxx17_h59595ed_0  conda-forge/linux-64     Cached
  + libarrow                13.0.0  h3b6bca8_14_cpu   conda-forge/linux-64     Cached
  + libbrotlicommon          1.1.0  hd590300_1        conda-forge/linux-64     Cached
  + libbrotlidec             1.1.0  hd590300_1        conda-forge/linux-64     Cached
  + libbrotlienc             1.1.0  hd590300_1        conda-forge/linux-64     Cached
  + libcrc32c                1.1.2  h9c3ff4c_0        conda-forge/linux-64     Cached
  + libevent                2.1.12  hf998b51_1        conda-forge/linux-64     Cached
  + libgoogle-cloud         2.12.0  h5206363_4        conda-forge/linux-64     Cached
  + libgrpc                 1.59.2  hd6c4280_0        conda-forge/linux-64     Cached
  + libnuma                 2.0.16  h0b41bf4_1        conda-forge/linux-64     Cached
  + libprotobuf             4.24.4  hf27288f_0        conda-forge/linux-64     Cached
  + libre2-11           2023.06.02  h7a70373_0        conda-forge/linux-64     Cached
  + libthrift               0.19.0  hb90f79a_1        conda-forge/linux-64     Cached
  + libutf8proc              2.8.0  h166bdaf_0        conda-forge/linux-64     Cached
  + lz4-c                    1.9.4  hcb278e6_0        conda-forge/linux-64     Cached
  + orc                      1.9.0  h4b38347_4        conda-forge/linux-64     Cached
  + r-arrow                 13.0.0  r43h59595ed_0     conda-forge/linux-64        4MB
  + rdma-core                 28.9  h59595ed_1        conda-forge/linux-64     Cached
  + re2                 2023.06.02  h2873b5e_0        conda-forge/linux-64     Cached
  + s2n                     1.3.56  h06160fa_0        conda-forge/linux-64     Cached
  + snappy                  1.1.10  h9fff704_0        conda-forge/linux-64     Cached
  + ucx                     1.15.0  h64cca9d_0        conda-forge/linux-64     Cached

  Summary:

  Install: 37 packages

  Total download: 4MB

───────────────────────────────────────────────────────────────────────────────────────

[+] 0.3s
Downloading  (1) ╸━━━━━━━━━━━━━━━━━━━━━━ 294.0kB r-arrow                    0.2s
Extracting       ━━━━━━━━━━━━━━━━━━━━━━━       0                            0.0serror    libmamba Error when extracting package: Failed to create dir 'share/gdb/auto-load/home/conda/feedstock_root/build_artifacts/r-arrow_1692941900561/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeholr-arrow                                              3.6MB @  10.1MB/s  0.4s
r-arrow-13.0.0-r43h59595ed_0.conda extraction failed
Found incorrect download: r-arrow. Aborting

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/home/mrhouse/miniforge3/lib/python3.10/site-packages/conda/exceptions.py", line 1132, in __call__
        return func(*args, **kwargs)
      File "/home/mrhouse/miniforge3/lib/python3.10/site-packages/mamba/mamba.py", line 941, in exception_converter
        raise e
      File "/home/mrhouse/miniforge3/lib/python3.10/site-packages/mamba/mamba.py", line 934, in exception_converter
        exit_code = _wrapped_main(*args, **kwargs)
      File "/home/mrhouse/miniforge3/lib/python3.10/site-packages/mamba/mamba.py", line 892, in _wrapped_main
        result = do_call(parsed_args, p)
      File "/home/mrhouse/miniforge3/lib/python3.10/site-packages/mamba/mamba.py", line 754, in do_call
        exit_code = install(args, parser, "install")
      File "/home/mrhouse/miniforge3/lib/python3.10/site-packages/mamba/mamba.py", line 588, in install
        transaction.fetch_extract_packages()
    RuntimeError: Found incorrect download: r-arrow. Aborting

`$ /home/mrhouse/miniforge3/bin/mamba install -y r-arrow`

  environment variables:
                 CIO_TEST=<not set>
        CONDA_DEFAULT_ENV=r-bees
                CONDA_EXE=/home/mrhouse/miniforge3/bin/conda
             CONDA_PREFIX=/home/mrhouse/miniforge3/envs/r-bees
           CONDA_PREFIX_1=/home/mrhouse/miniforge3
    CONDA_PROMPT_MODIFIER=(r-bees)
         CONDA_PYTHON_EXE=/home/mrhouse/miniforge3/bin/python
               CONDA_ROOT=/home/mrhouse/miniforge3
              CONDA_SHLVL=2
           CURL_CA_BUNDLE=<not set>
            DEFAULTS_PATH=/usr/share/gconf/cinnamon.default.path
               LD_PRELOAD=<not set>
           MANDATORY_PATH=/usr/share/gconf/cinnamon.mandatory.path
                     PATH=/home/mrhouse/miniforge3/envs/r-
                          bees/bin:/home/mrhouse/miniforge3/condabin:/usr/local/sbin:/usr/local/
                          bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bi
                          n
       REQUESTS_CA_BUNDLE=<not set>
            SSL_CERT_FILE=<not set>
            XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0
         XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0

     active environment : r-bees
    active env location : /home/mrhouse/miniforge3/envs/r-bees
            shell level : 2
       user config file : /home/mrhouse/.condarc
 populated config files : /home/mrhouse/miniforge3/.condarc
          conda version : 23.3.1
    conda-build version : not installed
         python version : 3.10.12.final.0
       virtual packages : __archspec=1=x86_64
                          __cuda=12.2=0
                          __glibc=2.35=0
                          __linux=5.15.0=0
                          __unix=0=0
       base environment : /home/mrhouse/miniforge3  (writable)
      conda av data dir : /home/mrhouse/miniforge3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /home/mrhouse/miniforge3/pkgs
                          /home/mrhouse/.conda/pkgs
       envs directories : /home/mrhouse/miniforge3/envs
                          /home/mrhouse/.conda/envs
               platform : linux-64
             user-agent : conda/23.3.1 requests/2.31.0 CPython/3.10.12 Linux/5.15.0-88-generic linuxmint/21.2 glibc/2.35
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False

An unexpected error has occurred. Conda has prepared the above report.

I've also tried sorting this with mamba install r-arrow --solver=classic only to get the same error, and conda install r-arrow --solver=classic throws: InvalidArchiveError("Error with archive /home/mrhouse/miniforge3/pkgs/r-arrow-13.0.0-r43h59595ed_0.conda. You probably need to delete and re-download or re-create this file. Message was:\n\nfailed with error: [Errno 36] File name too long: '/home/mrhouse/miniforge3/pkgs/r-arrow-13.0.0-r43h59595ed_0/share/gdb/auto-load/home/conda/feedstock_root/build_artifacts/r-arrow_1692941900561/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla'")

Not sure if this is a versioning issue with the package or something else, but any input would be appreciated.

Installed packages

# packages in environment at /home/mrhouse/miniforge3/envs/r-bees:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
_r-mutex                  1.0.1               anacondar_1    conda-forge
anyio                     4.0.0              pyhd8ed1ab_0    conda-forge
argon2-cffi               23.1.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0          py312h98912ed_4    conda-forge
arrow                     1.3.0              pyhd8ed1ab_0    conda-forge
asttokens                 2.4.1              pyhd8ed1ab_0    conda-forge
async-lru                 2.0.4              pyhd8ed1ab_0    conda-forge
attrs                     23.1.0             pyh71513ae_1    conda-forge
babel                     2.13.1             pyhd8ed1ab_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.5              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.12.2             pyha770c72_0    conda-forge
binutils_impl_linux-64    2.40                 hf600244_0    conda-forge
bleach                    6.1.0              pyhd8ed1ab_0    conda-forge
brotli-python             1.1.0           py312h30efb56_1    conda-forge
bwidget                   1.9.14               ha770c72_1    conda-forge
bzip2                     1.0.8                hd590300_5    conda-forge
c-ares                    1.21.0               hd590300_0    conda-forge
ca-certificates           2023.7.22            hbcca054_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
cairo                     1.18.0               h3faef2a_0    conda-forge
certifi                   2023.7.22          pyhd8ed1ab_0    conda-forge
cffi                      1.16.0          py312hf06ca03_0    conda-forge
charset-normalizer        3.3.2              pyhd8ed1ab_0    conda-forge
comm                      0.1.4              pyhd8ed1ab_0    conda-forge
curl                      8.4.0                hca28451_0    conda-forge
debugpy                   1.8.0           py312h30efb56_1    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
exceptiongroup            1.1.3              pyhd8ed1ab_0    conda-forge
executing                 2.0.1              pyhd8ed1ab_0    conda-forge
expat                     2.5.0                hcb278e6_1    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.2               h14ed4e7_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fqdn                      1.5.1              pyhd8ed1ab_0    conda-forge
freetype                  2.12.1               h267a509_2    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
gcc_impl_linux-64         13.2.0               h338b0a0_2    conda-forge
gettext                   0.21.1               h27087fc_0    conda-forge
gfortran_impl_linux-64    13.2.0               h76e1118_2    conda-forge
gmp                       6.2.1                h58526e2_0    conda-forge
graphite2                 1.3.13            h58526e2_1001    conda-forge
gxx_impl_linux-64         13.2.0               h338b0a0_2    conda-forge
harfbuzz                  8.2.1                h3d44ed6_0    conda-forge
icu                       73.2                 h59595ed_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
importlib-metadata        6.8.0              pyha770c72_0    conda-forge
importlib_metadata        6.8.0                hd8ed1ab_0    conda-forge
importlib_resources       6.1.1              pyhd8ed1ab_0    conda-forge
ipykernel                 6.26.0             pyhf8b6a83_0    conda-forge
ipython                   8.17.2             pyh41d4057_0    conda-forge
isoduration               20.11.0            pyhd8ed1ab_0    conda-forge
jedi                      0.19.1             pyhd8ed1ab_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
json5                     0.9.14             pyhd8ed1ab_0    conda-forge
jsonpointer               2.4             py312h7900ff3_3    conda-forge
jsonschema                4.19.2             pyhd8ed1ab_0    conda-forge
jsonschema-specifications 2023.7.1           pyhd8ed1ab_0    conda-forge
jsonschema-with-format-nongpl 4.19.2             pyhd8ed1ab_0    conda-forge
jupyter-lsp               2.2.0              pyhd8ed1ab_0    conda-forge
jupyter_client            8.6.0              pyhd8ed1ab_0    conda-forge
jupyter_core              5.5.0           py312h7900ff3_0    conda-forge
jupyter_events            0.9.0              pyhd8ed1ab_0    conda-forge
jupyter_server            2.10.0             pyhd8ed1ab_0    conda-forge
jupyter_server_terminals  0.4.4              pyhd8ed1ab_1    conda-forge
jupyterlab                4.0.8              pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
jupyterlab_server         2.25.1             pyhd8ed1ab_0    conda-forge
kernel-headers_linux-64   2.6.32              he073ed8_16    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.21.2               h659d440_0    conda-forge
ld_impl_linux-64          2.40                 h41732ed_0    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libblas                   3.9.0           19_linux64_openblas    conda-forge
libcurl                   8.4.0                hca28451_0    conda-forge
libdeflate                1.19                 hd590300_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libexpat                  2.5.0                hcb278e6_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-devel_linux-64     13.2.0               ha9c7c90_2    conda-forge
libgcc-ng                 13.2.0               h807b86a_2    conda-forge
libgfortran-ng            13.2.0               h69a702a_2    conda-forge
libgfortran5              13.2.0               ha4646dd_2    conda-forge
libglib                   2.78.1               hebfc3b9_0    conda-forge
libgomp                   13.2.0               h807b86a_2    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
libjpeg-turbo             3.0.0                hd590300_1    conda-forge
liblapack                 3.9.0           19_linux64_openblas    conda-forge
libnghttp2                1.58.0               h47da74e_0    conda-forge
libnsl                    2.0.1                hd590300_0    conda-forge
libopenblas               0.3.24          pthreads_h413a1c8_0    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
libsanitizer              13.2.0               h7e041cc_2    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libsqlite                 3.44.0               h2797004_0    conda-forge
libssh2                   1.11.0               h0841786_0    conda-forge
libstdcxx-devel_linux-64  13.2.0               ha9c7c90_2    conda-forge
libstdcxx-ng              13.2.0               h7e041cc_2    conda-forge
libtiff                   4.6.0                ha9c0a0a_2    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libwebp-base              1.3.2                hd590300_0    conda-forge
libxcb                    1.15                 h0b41bf4_0    conda-forge
libxml2                   2.11.5               h232c23b_1    conda-forge
libzlib                   1.2.13               hd590300_5    conda-forge
make                      4.3                  hd18ef5c_1    conda-forge
markupsafe                2.1.3           py312h98912ed_1    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
mistune                   3.0.2              pyhd8ed1ab_0    conda-forge
nbclient                  0.8.0              pyhd8ed1ab_0    conda-forge
nbconvert-core            7.11.0             pyhd8ed1ab_0    conda-forge
nbformat                  5.9.2              pyhd8ed1ab_0    conda-forge
ncurses                   6.4                  h59595ed_2    conda-forge
nest-asyncio              1.5.8              pyhd8ed1ab_0    conda-forge
notebook                  7.0.6              pyhd8ed1ab_0    conda-forge
notebook-shim             0.2.3              pyhd8ed1ab_0    conda-forge
openssl                   3.1.4                hd590300_0    conda-forge
overrides                 7.4.0              pyhd8ed1ab_0    conda-forge
packaging                 23.2               pyhd8ed1ab_0    conda-forge
pandoc                    3.1.3                h32600fe_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
pango                     1.50.14              ha41ecd1_2    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
pcre2                     10.40                hc3806b6_0    conda-forge
pexpect                   4.8.0              pyh1a96a4e_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pip                       23.3.1             pyhd8ed1ab_0    conda-forge
pixman                    0.42.2               h59595ed_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_1    conda-forge
platformdirs              3.11.0             pyhd8ed1ab_0    conda-forge
prometheus_client         0.18.0             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.39             pyha770c72_0    conda-forge
prompt_toolkit            3.0.39               hd8ed1ab_0    conda-forge
psutil                    5.9.5           py312h98912ed_1    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pygments                  2.16.1             pyhd8ed1ab_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
python                    3.12.0          hab00c5b_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.18.1             pyhd8ed1ab_0    conda-forge
python-json-logger        2.0.7              pyhd8ed1ab_0    conda-forge
python_abi                3.12                    4_cp312    conda-forge
pytz                      2023.3.post1       pyhd8ed1ab_0    conda-forge
pyyaml                    6.0.1           py312h98912ed_1    conda-forge
pyzmq                     25.1.1          py312h886d080_2    conda-forge
r-askpass                 1.2.0             r43h57805ef_0    conda-forge
r-assertthat              0.2.1             r43hc72bb7e_4    conda-forge
r-backports               1.4.1             r43h57805ef_2    conda-forge
r-base                    4.3.2                h93585b2_0    conda-forge
r-base64enc               0.1_3           r43h57805ef_1006    conda-forge
r-bit                     4.0.5             r43h57805ef_1    conda-forge
r-bit64                   4.0.5             r43h57805ef_2    conda-forge
r-blob                    1.2.4             r43hc72bb7e_1    conda-forge
r-boot                    1.3_28.1          r43hc72bb7e_1    conda-forge
r-broom                   1.0.5             r43hc72bb7e_1    conda-forge
r-bslib                   0.5.1             r43hc72bb7e_0    conda-forge
r-cachem                  1.0.8             r43h57805ef_1    conda-forge
r-callr                   3.7.3             r43hc72bb7e_1    conda-forge
r-caret                   6.0_94            r43h57805ef_1    conda-forge
r-cellranger              1.1.0           r43hc72bb7e_1006    conda-forge
r-class                   7.3_22            r43h57805ef_1    conda-forge
r-cli                     3.6.1             r43ha503ecb_1    conda-forge
r-clipr                   0.8.0             r43hc72bb7e_2    conda-forge
r-clock                   0.7.0             r43ha503ecb_1    conda-forge
r-cluster                 2.1.4             r43h61816a4_1    conda-forge
r-codetools               0.2_19            r43hc72bb7e_1    conda-forge
r-colorspace              2.1_0             r43h57805ef_1    conda-forge
r-commonmark              1.9.0             r43h57805ef_1    conda-forge
r-conflicted              1.2.0             r43h785f33e_1    conda-forge
r-cpp11                   0.4.6             r43hc72bb7e_0    conda-forge
r-crayon                  1.5.2             r43hc72bb7e_2    conda-forge
r-crul                    1.4.0             r43h785f33e_1    conda-forge
r-curl                    5.1.0             r43hf9611b0_0    conda-forge
r-data.table              1.14.8            r43h029312a_2    conda-forge
r-dbi                     1.1.3             r43hc72bb7e_2    conda-forge
r-dbplyr                  2.4.0             r43hc72bb7e_0    conda-forge
r-diagram                 1.6.5             r43ha770c72_2    conda-forge
r-digest                  0.6.33            r43ha503ecb_0    conda-forge
r-dplyr                   1.1.3             r43ha503ecb_0    conda-forge
r-dtplyr                  1.3.1             r43hc72bb7e_1    conda-forge
r-e1071                   1.7_13            r43ha503ecb_1    conda-forge
r-ellipsis                0.3.2             r43h57805ef_2    conda-forge
r-essentials              4.3             r43hd8ed1ab_2004    conda-forge
r-evaluate                0.23              r43hc72bb7e_0    conda-forge
r-fansi                   1.0.5             r43h57805ef_0    conda-forge
r-farver                  2.1.1             r43ha503ecb_2    conda-forge
r-fastmap                 1.1.1             r43ha503ecb_1    conda-forge
r-fontawesome             0.5.2             r43hc72bb7e_0    conda-forge
r-forcats                 1.0.0             r43hc72bb7e_1    conda-forge
r-foreach                 1.5.2             r43hc72bb7e_2    conda-forge
r-foreign                 0.8_85            r43h57805ef_0    conda-forge
r-formatr                 1.14              r43hc72bb7e_1    conda-forge
r-fs                      1.6.3             r43ha503ecb_0    conda-forge
r-future                  1.33.0            r43hc72bb7e_0    conda-forge
r-future.apply            1.11.0            r43hc72bb7e_1    conda-forge
r-gargle                  1.5.2             r43h785f33e_0    conda-forge
r-generics                0.1.3             r43hc72bb7e_2    conda-forge
r-ggplot2                 3.4.4             r43hc72bb7e_0    conda-forge
r-gistr                   0.9.0             r43hc72bb7e_2    conda-forge
r-glmnet                  4.1_8             r43hcf54a89_0    conda-forge
r-globals                 0.16.2            r43hc72bb7e_1    conda-forge
r-glue                    1.6.2             r43h57805ef_2    conda-forge
r-googledrive             2.1.1             r43hc72bb7e_1    conda-forge
r-googlesheets4           1.1.1             r43h785f33e_1    conda-forge
r-gower                   1.0.1             r43h57805ef_1    conda-forge
r-gtable                  0.3.4             r43hc72bb7e_0    conda-forge
r-hardhat                 1.3.0             r43hc72bb7e_1    conda-forge
r-haven                   2.5.3             r43ha503ecb_0    conda-forge
r-hexbin                  1.28.3            r43h61816a4_1    conda-forge
r-highr                   0.10              r43hc72bb7e_1    conda-forge
r-hms                     1.1.3             r43hc72bb7e_1    conda-forge
r-htmltools               0.5.7             r43ha503ecb_0    conda-forge
r-htmlwidgets             1.6.2             r43hc72bb7e_1    conda-forge
r-httpcode                0.3.0             r43ha770c72_3    conda-forge
r-httpuv                  1.6.12            r43ha503ecb_0    conda-forge
r-httr                    1.4.7             r43hc72bb7e_0    conda-forge
r-ids                     1.0.1             r43hc72bb7e_3    conda-forge
r-ipred                   0.9_14            r43h57805ef_1    conda-forge
r-irdisplay               1.1               r43hd8ed1ab_2    conda-forge
r-irkernel                1.3.2             r43h785f33e_1    conda-forge
r-isoband                 0.2.7             r43ha503ecb_2    conda-forge
r-iterators               1.0.14            r43hc72bb7e_2    conda-forge
r-jquerylib               0.1.4             r43hc72bb7e_2    conda-forge
r-jsonlite                1.8.7             r43h57805ef_0    conda-forge
r-kernsmooth              2.23_22           r43h13b3f57_0    conda-forge
r-knitr                   1.45              r43hc72bb7e_0    conda-forge
r-labeling                0.4.3             r43hc72bb7e_0    conda-forge
r-later                   1.3.1             r43ha503ecb_1    conda-forge
r-lattice                 0.22_5            r43h57805ef_0    conda-forge
r-lava                    1.7.3             r43hc72bb7e_0    conda-forge
r-lazyeval                0.2.2             r43h57805ef_4    conda-forge
r-lifecycle               1.0.4             r43hc72bb7e_0    conda-forge
r-listenv                 0.9.0             r43hc72bb7e_1    conda-forge
r-lobstr                  1.1.2             r43ha503ecb_3    conda-forge
r-lubridate               1.9.3             r43h57805ef_0    conda-forge
r-magrittr                2.0.3             r43h57805ef_2    conda-forge
r-maps                    3.4.1.1           r43h57805ef_0    conda-forge
r-mass                    7.3_60            r43h57805ef_1    conda-forge
r-matrix                  1.6_2             r43h316c678_0    conda-forge
r-memoise                 2.0.1             r43hc72bb7e_2    conda-forge
r-mgcv                    1.9_0             r43h316c678_0    conda-forge
r-mime                    0.12              r43h57805ef_2    conda-forge
r-modelmetrics            1.2.2.2           r43ha503ecb_3    conda-forge
r-modelr                  0.1.11            r43hc72bb7e_1    conda-forge
r-munsell                 0.5.0           r43hc72bb7e_1006    conda-forge
r-nlme                    3.1_163           r43h61816a4_0    conda-forge
r-nnet                    7.3_19            r43h57805ef_1    conda-forge
r-numderiv                2016.8_1.1        r43hc72bb7e_5    conda-forge
r-openssl                 2.1.1             r43hb353fa6_0    conda-forge
r-parallelly              1.36.0            r43hc72bb7e_1    conda-forge
r-pbdzmq                  0.3_10            r43hc2df49b_1    conda-forge
r-pillar                  1.9.0             r43hc72bb7e_1    conda-forge
r-pkgconfig               2.0.3             r43hc72bb7e_3    conda-forge
r-plyr                    1.8.9             r43ha503ecb_0    conda-forge
r-prettyunits             1.2.0             r43hc72bb7e_0    conda-forge
r-proc                    1.18.5            r43ha503ecb_0    conda-forge
r-processx                3.8.2             r43h57805ef_0    conda-forge
r-prodlim                 2023.08.28        r43ha503ecb_0    conda-forge
r-progress                1.2.2             r43hc72bb7e_4    conda-forge
r-progressr               0.14.0            r43hc72bb7e_0    conda-forge
r-promises                1.2.1             r43ha503ecb_0    conda-forge
r-proxy                   0.4_27            r43h57805ef_2    conda-forge
r-pryr                    0.1.6             r43ha503ecb_1    conda-forge
r-ps                      1.7.5             r43h57805ef_1    conda-forge
r-purrr                   1.0.2             r43h57805ef_0    conda-forge
r-quantmod                0.4.25            r43hc72bb7e_0    conda-forge
r-r6                      2.5.1             r43hc72bb7e_2    conda-forge
r-ragg                    1.2.6             r43h73ae6e3_0    conda-forge
r-randomforest            4.7_1.1           r43h61816a4_2    conda-forge
r-rappdirs                0.3.3             r43h57805ef_2    conda-forge
r-rbokeh                  0.5.2             r43hc72bb7e_3    conda-forge
r-rcolorbrewer            1.1_3             r43h785f33e_2    conda-forge
r-rcpp                    1.0.11            r43h7df8631_0    conda-forge
r-rcppeigen               0.3.3.9.4         r43h08d816e_0    conda-forge
r-readr                   2.1.4             r43ha503ecb_1    conda-forge
r-readxl                  1.4.3             r43ha5c9fba_0    conda-forge
r-recipes                 1.0.8             r43hc72bb7e_0    conda-forge
r-recommended             4.3             r43hd8ed1ab_1006    conda-forge
r-rematch                 2.0.0             r43hc72bb7e_0    conda-forge
r-rematch2                2.1.2             r43hc72bb7e_3    conda-forge
r-repr                    1.1.6             r43h785f33e_1    conda-forge
r-reprex                  2.0.2             r43hc72bb7e_2    conda-forge
r-reshape2                1.4.4             r43ha503ecb_3    conda-forge
r-rlang                   1.1.2             r43ha503ecb_0    conda-forge
r-rmarkdown               2.25              r43hc72bb7e_0    conda-forge
r-rpart                   4.1.21            r43h57805ef_0    conda-forge
r-rstudioapi              0.15.0            r43hc72bb7e_0    conda-forge
r-rvest                   1.0.3             r43hc72bb7e_2    conda-forge
r-sass                    0.4.7             r43ha503ecb_0    conda-forge
r-scales                  1.2.1             r43hc72bb7e_2    conda-forge
r-selectr                 0.4_2             r43hc72bb7e_3    conda-forge
r-shape                   1.4.6             r43ha770c72_2    conda-forge
r-shiny                   1.7.5.1           r43h785f33e_0    conda-forge
r-sourcetools             0.1.7_1           r43ha503ecb_1    conda-forge
r-spatial                 7.3_17            r43h57805ef_0    conda-forge
r-squarem                 2021.1            r43hc72bb7e_2    conda-forge
r-stringi                 1.7.12            r43h9facbd6_3    conda-forge
r-stringr                 1.5.0             r43h785f33e_1    conda-forge
r-survival                3.5_7             r43h57805ef_0    conda-forge
r-sys                     3.4.2             r43h57805ef_1    conda-forge
r-systemfonts             1.0.5             r43haf97adc_0    conda-forge
r-textshaping             0.3.7             r43hd87b9d6_0    conda-forge
r-tibble                  3.2.1             r43h57805ef_2    conda-forge
r-tidyr                   1.3.0             r43ha503ecb_1    conda-forge
r-tidyselect              1.2.0             r43hc72bb7e_1    conda-forge
r-tidyverse               2.0.0             r43h785f33e_1    conda-forge
r-timechange              0.2.0             r43ha503ecb_1    conda-forge
r-timedate                4022.108          r43hc72bb7e_1    conda-forge
r-tinytex                 0.48              r43hc72bb7e_1    conda-forge
r-triebeard               0.4.1             r43ha503ecb_1    conda-forge
r-ttr                     0.24.3            r43h57805ef_2    conda-forge
r-tzdb                    0.4.0             r43ha503ecb_1    conda-forge
r-urltools                1.7.3             r43ha503ecb_4    conda-forge
r-utf8                    1.2.4             r43h57805ef_0    conda-forge
r-uuid                    1.1_1             r43h57805ef_0    conda-forge
r-vctrs                   0.6.4             r43ha503ecb_0    conda-forge
r-viridislite             0.4.2             r43hc72bb7e_1    conda-forge
r-vroom                   1.6.4             r43ha503ecb_0    conda-forge
r-withr                   2.5.2             r43hc72bb7e_0    conda-forge
r-xfun                    0.41              r43ha503ecb_0    conda-forge
r-xml2                    1.3.5             r43h1ad5fc0_0    conda-forge
r-xtable                  1.8_4             r43hc72bb7e_5    conda-forge
r-xts                     0.13.1            r43h57805ef_1    conda-forge
r-yaml                    2.3.7             r43h57805ef_1    conda-forge
r-zoo                     1.8_12            r43h57805ef_1    conda-forge
readline                  8.2                  h8228510_1    conda-forge
referencing               0.30.2             pyhd8ed1ab_0    conda-forge
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
rfc3339-validator         0.1.4              pyhd8ed1ab_0    conda-forge
rfc3986-validator         0.1.1              pyh9f0ad1d_0    conda-forge
rpds-py                   0.12.0          py312h4b3b743_0    conda-forge
sed                       4.8                  he412f7d_0    conda-forge
send2trash                1.8.2              pyh41d4057_0    conda-forge
setuptools                68.2.2             pyhd8ed1ab_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.5                pyhd8ed1ab_1    conda-forge
stack_data                0.6.2              pyhd8ed1ab_0    conda-forge
sysroot_linux-64          2.12                he073ed8_16    conda-forge
terminado                 0.17.1             pyh41d4057_0    conda-forge
tinycss2                  1.2.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.13          noxft_h4845f30_101    conda-forge
tktable                   2.10                 h0c5db8f_5    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tornado                   6.3.3           py312h98912ed_1    conda-forge
traitlets                 5.13.0             pyhd8ed1ab_0    conda-forge
types-python-dateutil     2.8.19.14          pyhd8ed1ab_0    conda-forge
typing-extensions         4.8.0                hd8ed1ab_0    conda-forge
typing_extensions         4.8.0              pyha770c72_0    conda-forge
typing_utils              0.1.0              pyhd8ed1ab_0    conda-forge
tzdata                    2023c                h71feb2d_0    conda-forge
uri-template              1.3.0              pyhd8ed1ab_0    conda-forge
urllib3                   2.0.7              pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.9              pyhd8ed1ab_0    conda-forge
webcolors                 1.13               pyhd8ed1ab_0    conda-forge
webencodings              0.5.1              pyhd8ed1ab_2    conda-forge
websocket-client          1.6.4              pyhd8ed1ab_0    conda-forge
wheel                     0.41.3             pyhd8ed1ab_0    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.1.1                hd590300_0    conda-forge
xorg-libsm                1.2.4                h7391055_0    conda-forge
xorg-libx11               1.8.7                h8ee46fc_0    conda-forge
xorg-libxau               1.0.11               hd590300_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h0b41bf4_2    conda-forge
xorg-libxrender           0.9.11               hd590300_0    conda-forge
xorg-libxt                1.3.0                hd590300_1    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h0b41bf4_1003    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
zeromq                    4.3.5                h59595ed_0    conda-forge
zipp                      3.17.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               hd590300_5    conda-forge
zstd                      1.5.5                hfc55251_0    conda-forge

Environment info

active environment : r-bees
    active env location : /home/mrhouse/miniforge3/envs/r-bees
            shell level : 2
       user config file : /home/mrhouse/.condarc
 populated config files : /home/mrhouse/miniforge3/.condarc
          conda version : 23.3.1
    conda-build version : not installed
         python version : 3.10.12.final.0
       virtual packages : __archspec=1=x86_64
                          __cuda=12.2=0
                          __glibc=2.35=0
                          __linux=5.15.0=0
                          __unix=0=0
       base environment : /home/mrhouse/miniforge3  (writable)
      conda av data dir : /home/mrhouse/miniforge3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /home/mrhouse/miniforge3/pkgs
                          /home/mrhouse/.conda/pkgs
       envs directories : /home/mrhouse/miniforge3/envs
                          /home/mrhouse/.conda/envs
               platform : linux-64
             user-agent : conda/23.3.1 requests/2.31.0 CPython/3.10.12 Linux/5.15.0-88-generic linuxmint/21.2 glibc/2.35
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False
jaimergp commented 8 months ago

Try conda clean to clear the pkgs cache and run the install command again.

raphaelobinna commented 2 months ago

I had similar issue but with another package.

Following the instructions from here https://github.com/conda-forge/miniforge/issues/513. Fixed it for me

I ran mamba clean --all and conda clean --all

Then I created an environment called mamba conda create -n mamba

I activated the environment conda activate mamba

And I just proceeded with my mamba create -n envname packages...

So just check that you are not running the installation from your conda base environment