search

conda-forge / mkl_fft-feedstock

A conda-smithy repository for mkl_fft.
BSD 3-Clause "New" or "Revised" License
0 stars 5 forks source link

can not load libmkl core #31

Open CJ-Wright opened 5 years ago

CJ-Wright commented 5 years ago

Issue: While trying to use tomopy I got the following error Intel MKL FATAL ERROR: Cannot load /home/travis/mc/envs/testenv/lib/python3.6/site-packages/mkl_fft/../../../libmkl_core.so. ping: @isuruf
Environment (conda list):

``` $ conda list # Name Version Build Channel alabaster 0.7.12 py_0 conda-forge asn1crypto 0.24.0 py36_1003 conda-forge atomicwrites 1.3.0 py_0 conda-forge attrs 19.1.0 py_0 conda-forge babel 2.6.0 py_1 conda-forge backcall 0.1.0 py_0 conda-forge bluesky 1.5.2 py36_0 conda-forge boltons 19.1.0 py_0 conda-forge bzip2 1.0.6 h14c3975_1002 conda-forge ca-certificates 2019.3.9 hecc5488_0 conda-forge certifi 2019.3.9 py36_0 conda-forge cffi 1.12.2 py36hf0e25f4_1 conda-forge cftime 1.0.3.4 py36h3010b51_1000 conda-forge chardet 3.0.4 py36_1003 conda-forge click 7.0 py_0 conda-forge cloudpickle 0.8.1 py_0 conda-forge codecov 2.0.15 py_1 conda-forge conda 4.6.13 py36_0 conda-forge coverage 4.5.3 py36h14c3975_0 conda-forge cryptography 2.6.1 py36h72c5cf5_0 conda-forge curl 7.64.1 hf8cf82a_0 conda-forge cycler 0.10.0 py_1 conda-forge cytoolz 0.9.0.1 py36h14c3975_1001 conda-forge dask-core 1.2.0 py_0 conda-forge databroker 0.12.2 py_0 conda-forge dbus 1.13.2 h714fa37_1 decorator 4.4.0 py_0 conda-forge distributed 1.27.0 py36_0 conda-forge doct 1.0.5 py_0 conda-forge doctr 1.8.0 py_0 conda-forge docutils 0.14 py36_1001 conda-forge dxchange 0.1.5 py36_1000 conda-forge dxfile 0.5 py_1 conda-forge edffile 5.0.0 pyh24bf2e0_1000 conda-forge entrypoints 0.3 py36_1000 conda-forge event-model 1.8.3 py_0 conda-forge expat 2.2.5 hf484d3e_1002 conda-forge fabio 0.9.0 py36hd352d35_0 conda-forge fire 0.1.3 py_1 conda-forge flake8 3.7.7 py36_0 conda-forge fontconfig 2.13.1 he4413a7_1000 conda-forge freetype 2.10.0 he983fc9_0 conda-forge gettext 0.19.8.1 hc5be6a0_1002 conda-forge glib 2.56.2 had28632_1001 conda-forge gst-plugins-base 1.14.0 hbbd80ab_1 gstreamer 1.14.0 hb453b48_1 h5py 2.9.0 nompi_py36hf008753_1102 conda-forge hdf4 4.2.13 h9a582f1_1002 conda-forge hdf5 1.10.4 nompi_h3c11f04_1106 conda-forge heapdict 1.0.0 py36_1000 conda-forge historydict 1.2.3 py_0 conda-forge humanize 0.5.1 py_1 conda-forge icu 58.2 hf484d3e_1000 conda-forge idna 2.8 py36_1000 conda-forge imageio 2.5.0 py36_0 conda-forge imagesize 1.1.0 py_0 conda-forge intel-openmp 2019.3 199 ipykernel 5.1.0 py36h24bf2e0_1002 conda-forge ipython 7.4.0 py36h24bf2e0_0 conda-forge ipython_genutils 0.2.0 py_1 conda-forge jedi 0.13.3 py36_0 conda-forge jinja2 2.10.1 py_0 conda-forge jpeg 9c h14c3975_1001 conda-forge jsonschema 3.0.1 py36_0 conda-forge jupyter_client 5.2.4 py_3 conda-forge jupyter_core 4.4.0 py_0 conda-forge kiwisolver 1.0.1 py36h6bb024c_1002 conda-forge krb5 1.16.3 h05b26f9_1001 conda-forge lazyasd 0.1.4 py_1 conda-forge libblas 3.8.0 5_openblas conda-forge libcblas 3.8.0 5_openblas conda-forge libcurl 7.64.1 hda55be3_0 conda-forge libedit 3.1.20170329 hf8c457e_1001 conda-forge libffi 3.2.1 he1b5a44_1006 conda-forge libgcc-ng 8.2.0 hdf63c60_1 libgfortran-ng 7.3.0 hdf63c60_0 libiconv 1.15 h516909a_1005 conda-forge liblapack 3.8.0 5_openblas conda-forge libnetcdf 4.6.2 hbdf4f91_1001 conda-forge libpng 1.6.37 hed695b0_0 conda-forge libsodium 1.0.16 h14c3975_1001 conda-forge libssh2 1.8.2 h22169c7_2 conda-forge libstdcxx-ng 8.2.0 hdf63c60_1 libtiff 4.0.10 h648cc4a_1001 conda-forge libuuid 2.32.1 h14c3975_1000 conda-forge libxcb 1.13 h14c3975_1002 conda-forge libxml2 2.9.8 h143f9aa_1005 conda-forge libxslt 1.1.32 h4785a14_1002 conda-forge llvmlite 0.23.0 py36_1 conda-forge lmfit 0.8.3 py36_1 conda-forge lxml 4.3.3 py36h7ec2d77_0 conda-forge mako 1.0.7 py_1 conda-forge markupsafe 1.1.1 py36h14c3975_0 conda-forge matplotlib 3.0.3 py36_0 conda-forge matplotlib-base 3.0.3 py36h167e16e_0 conda-forge mccabe 0.6.1 py_1 conda-forge mkl 2019.3 199 mkl_fft 1.0.10 py36_0 conda-forge mongoquery 1.1.0 py_1 conda-forge more-itertools 4.3.0 py36_1000 conda-forge msgpack-python 0.6.1 py36h6bb024c_0 conda-forge ncurses 6.1 hf484d3e_1002 conda-forge netcdf4 1.5.0.1 py36had58050_0 conda-forge networkx 2.3 py_0 conda-forge nose 1.3.7 py36_1002 conda-forge numba 0.38.1 py36_0 conda-forge numexpr 2.6.9 py36h637b7d7_1000 conda-forge numpy 1.16.2 py36h8b7e671_1 conda-forge olefile 0.46 py_0 conda-forge openblas 0.3.5 h9ac9557_1001 conda-forge openssl 1.1.1b h14c3975_1 conda-forge ophyd 1.3.2 py36_0 conda-forge orch 0.4.1 py_0 conda-forge packaging 19.0 py_0 conda-forge pandas 0.24.2 py36hf484d3e_0 conda-forge parso 0.4.0 py_0 conda-forge pcre 8.43 he6710b0_0 pexpect 4.7.0 py36_0 conda-forge pickleshare 0.7.5 py36_1000 conda-forge pillow 6.0.0 py36he7afcd5_0 conda-forge pims 0.4.1 py_1 conda-forge pip 19.0.3 py36_0 conda-forge pluggy 0.9.0 py_0 conda-forge prettytable 0.7.2 py_2 conda-forge prompt_toolkit 2.0.9 py_0 conda-forge psutil 5.6.1 py36h14c3975_0 conda-forge pthread-stubs 0.4 h14c3975_1001 conda-forge ptyprocess 0.6.0 py_1001 conda-forge py 1.8.0 py_0 conda-forge pycodestyle 2.5.0 py_0 conda-forge pycosat 0.6.3 py36h14c3975_1001 conda-forge pycparser 2.19 py36_1 conda-forge pyfai 0.17.0 py36hf2d7682_1001 conda-forge pyflakes 2.1.1 py_0 conda-forge pygments 2.3.1 py_0 conda-forge pyopenssl 19.0.0 py36_0 conda-forge pyparsing 2.4.0 py_0 conda-forge pyqt 5.6.0 py36h13b7fb3_1008 conda-forge pyrsistent 0.14.11 py36h14c3975_0 conda-forge pysocks 1.6.8 py36_1002 conda-forge pytest 3.10.1 py36_1000 conda-forge pytest-env 0.6.2 py_0 conda-forge pytest-tornado 0.5.0 py_0 conda-forge python 3.6.7 h381d211_1004 conda-forge python-dateutil 2.8.0 py_0 conda-forge pytz 2019.1 py_0 conda-forge pywavelets 1.0.3 py36hd352d35_1 conda-forge pyyaml 5.1 py36h14c3975_0 conda-forge pyzmq 18.0.1 py36h0e1adb2_0 conda-forge qt 5.6.3 h8bf5577_3 qtconsole 4.4.3 py_0 conda-forge rapidz 0.2.0 py_0 conda-forge readline 7.0 hf8c457e_1001 conda-forge requests 2.21.0 py36_1000 conda-forge ruamel_yaml 0.15.71 py36h14c3975_1000 conda-forge scikit-beam 0.0.14 py36h7eb728f_0 conda-forge scikit-image 0.15.0 py36he1b5a44_0 conda-forge scikit-learn 0.20.3 py36ha8026db_1 conda-forge scipy 1.2.1 py36h09a28d5_1 conda-forge setproctitle 1.1.10 py36h14c3975_1001 conda-forge setuptools 41.0.0 py36_0 conda-forge silx 0.10.1 py36hf2d7682_0 conda-forge sip 4.18.1 py36hf484d3e_1000 conda-forge six 1.12.0 py36_1000 conda-forge slicerator 1.0.0 py_0 conda-forge snowballstemmer 1.2.1 py_1 conda-forge sortedcontainers 2.1.0 py_0 conda-forge spefile 1.6 py_1 conda-forge sphinx 2.0.1 py_0 conda-forge sphinx_rtd_theme 0.4.3 py_0 conda-forge sphinxcontrib-applehelp 1.0.1 py_0 conda-forge sphinxcontrib-devhelp 1.0.1 py_0 conda-forge sphinxcontrib-htmlhelp 1.0.2 py_0 conda-forge sphinxcontrib-jsmath 1.0.1 py_0 conda-forge sphinxcontrib-qthelp 1.0.2 py_0 conda-forge sphinxcontrib-serializinghtml 1.1.1 py_0 conda-forge sqlite 3.26.0 h67949de_1001 conda-forge super_state_machine 2.0.2 py36_1000 conda-forge tblib 1.3.2 py_1 conda-forge tifffile 0.15.1 py36h3010b51_1001 conda-forge tk 8.6.9 h84994c4_1001 conda-forge tomopy 1.4.1 py36h516909a_0 conda-forge toolz 0.9.0 py_1 conda-forge tornado 6.0.2 py36h516909a_0 conda-forge tqdm 4.31.1 py_0 conda-forge traitlets 4.3.2 py36_1000 conda-forge tzlocal 1.5.1 py_0 conda-forge ujson 1.35 py36h14c3975_1001 conda-forge urllib3 1.24.1 py36_1000 conda-forge wcwidth 0.1.7 py_1 conda-forge wheel 0.33.1 py36_0 conda-forge xonda 0.9.0 py_0 conda-forge xonsh 0.8.12 py36_0 conda-forge xorg-libxau 1.0.9 h14c3975_0 conda-forge xorg-libxdmcp 1.1.3 h516909a_0 conda-forge xpdsim 0.2.0 py36_0 conda-forge xpdtools 0.7.0 pypi_0 pypi xraylib 3.3.0 py36h80923ca_1002 conda-forge xz 5.2.4 h14c3975_1001 conda-forge yaml 0.1.7 h14c3975_1001 conda-forge zeromq 4.2.5 hf484d3e_1006 conda-forge zict 0.1.4 py_0 conda-forge zlib 1.2.11 h14c3975_1004 conda-forge ```


Details about conda and system ( conda info ):

``` $ conda info Newest miniconda3 with conda update conda being run ```
isuruf commented 5 years ago

Just import tomopy triggers this?

CJ-Wright commented 5 years ago

Running this test function triggers it: https://github.com/xpdAcq/xpdtools/blob/master/xpdtools/tests/test_pipelines.py#L117

Here is the almost identical build. This one was rebuilt today: https://travis-ci.org/xpdAcq/xpdtools/jobs/511617537

This one was built 22 days ago: https://travis-ci.org/xpdAcq/xpdtools/jobs/511617538

There are no code variations between these two (just a difference in a streaming data library which is not related to tomopy)

CJ-Wright commented 5 years ago

Interestingly this only seems to happen when I run the full test suite, when running a small chunk (like just the part that caused the error) then everything is fine.