conda-forge / napari-aicsimageio-feedstock

A conda-smithy repository for napari-aicsimageio.
BSD 3-Clause "New" or "Revised" License
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Installing `napari-aicsimageio` along with `pandas` results in missing dependencies #13

Open jplumail opened 11 months ago

jplumail commented 11 months ago

Solution to issue cannot be found in the documentation.

Issue

When I put pandas as a requirement with napari-aicsimageio such as: conda create -y -n napari napari-aicsimageio pandas

I get a wrong environment, conda activate napari && pip check:

aicsimageio 4.10.0 requires ome-zarr, which is not installed.
aicsimageio 4.10.0 requires xmlschema, which is not installed.
napari-aicsimageio 0.7.2 requires aicspylibczi, which is not installed.
aicsimageio 4.10.0 has requirement tifffile<2023.3.15,>=2021.8.30, but you have tifffile 2023.9.26.
aicsimageio 4.10.0 has requirement xarray<2023.02.0,>=0.16.1, but you have xarray 2023.10.1.

This is ok for aicspylibczi, it's not on conda-forge. But for all of the other, this is weird.

If I try to install aicsimageio only, everything works fine. conda create -y -n napari aicsimageio pandas && conda activate napari && pip check returns:

No broken requirements found.

Installed packages

# packages in environment at /home/plumail/miniforge3/envs/napari:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
aicsimageio               4.10.0             pyhd8ed1ab_0    conda-forge
alabaster                 0.7.13             pyhd8ed1ab_0    conda-forge
alsa-lib                  1.2.10               hd590300_0    conda-forge
aom                       3.6.1                h59595ed_0    conda-forge
app-model                 0.2.2              pyhd8ed1ab_0    conda-forge
appdirs                   1.4.4              pyh9f0ad1d_0    conda-forge
asciitree                 0.3.3                      py_2    conda-forge
asttokens                 2.4.1              pyhd8ed1ab_0    conda-forge
attrs                     23.1.0             pyh71513ae_1    conda-forge
aws-c-auth                0.7.5                h1a24852_0    conda-forge
aws-c-cal                 0.6.7                h6e18cf3_0    conda-forge
aws-c-common              0.9.4                hd590300_0    conda-forge
aws-c-compression         0.2.17               h037bafe_4    conda-forge
aws-c-event-stream        0.3.2                he4fbe49_4    conda-forge
aws-c-http                0.7.13               hbbfb9a7_7    conda-forge
aws-c-io                  0.13.35              hd1885a1_4    conda-forge
aws-c-mqtt                0.9.8                h31a96f8_0    conda-forge
aws-c-s3                  0.3.20               he249171_1    conda-forge
aws-c-sdkutils            0.1.12               h037bafe_3    conda-forge
aws-checksums             0.1.17               h037bafe_3    conda-forge
aws-crt-cpp               0.24.4               h28e6ea9_2    conda-forge
aws-sdk-cpp               1.11.182             hb97d603_2    conda-forge
babel                     2.13.1             pyhd8ed1ab_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.5              pyhd8ed1ab_0    conda-forge
bioformats_jar            2020.5.27          pyhd8ed1ab_0    conda-forge
blosc                     1.21.5               h0f2a231_0    conda-forge
bokeh                     3.3.0              pyhd8ed1ab_0    conda-forge
brotli                    1.1.0                hd590300_1    conda-forge
brotli-bin                1.1.0                hd590300_1    conda-forge
brotli-python             1.1.0           py311hb755f60_1    conda-forge
brunsli                   0.1                  h9c3ff4c_0    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.20.1               hd590300_1    conda-forge
c-blosc2                  2.10.5               hb4ffafa_0    conda-forge
ca-certificates           2023.7.22            hbcca054_0    conda-forge
cachey                    0.2.1              pyh9f0ad1d_0    conda-forge
cairo                     1.18.0               h3faef2a_0    conda-forge
certifi                   2023.7.22          pyhd8ed1ab_0    conda-forge
charls                    2.4.2                h59595ed_0    conda-forge
charset-normalizer        3.3.2              pyhd8ed1ab_0    conda-forge
click                     8.1.7           unix_pyh707e725_0    conda-forge
click-default-group       1.2.4              pyhd8ed1ab_0    conda-forge
cloudpickle               3.0.0              pyhd8ed1ab_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
comm                      0.1.4              pyhd8ed1ab_0    conda-forge
contourpy                 1.1.1           py311h9547e67_1    conda-forge
cytoolz                   0.12.2          py311h459d7ec_1    conda-forge
dask                      2023.10.1          pyhd8ed1ab_0    conda-forge
dask-core                 2023.10.1          pyhd8ed1ab_0    conda-forge
dav1d                     1.2.1                hd590300_0    conda-forge
debugpy                   1.8.0           py311hb755f60_1    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
distributed               2023.10.1          pyhd8ed1ab_0    conda-forge
docformatter              1.7.5              pyhd8ed1ab_0    conda-forge
docstring_parser          0.15               pyhd8ed1ab_0    conda-forge
docutils                  0.17.1          py311h38be061_4    conda-forge
exceptiongroup            1.1.3              pyhd8ed1ab_0    conda-forge
executing                 2.0.1              pyhd8ed1ab_0    conda-forge
expat                     2.5.0                hcb278e6_1    conda-forge
fasteners                 0.17.3             pyhd8ed1ab_0    conda-forge
ffmpeg                    6.0.0           gpl_h334edf3_105    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.2               h14ed4e7_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
freetype                  2.12.1               h267a509_2    conda-forge
freetype-py               2.4.0              pyhd8ed1ab_0    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
fsspec                    2023.10.0          pyhca7485f_0    conda-forge
gettext                   0.21.1               h27087fc_0    conda-forge
gflags                    2.2.2             he1b5a44_1004    conda-forge
giflib                    5.2.1                h0b41bf4_3    conda-forge
glog                      0.6.0                h6f12383_0    conda-forge
gmp                       6.2.1                h58526e2_0    conda-forge
gnutls                    3.7.8                hf3e180e_0    conda-forge
graphite2                 1.3.13            h58526e2_1001    conda-forge
harfbuzz                  8.2.1                h3d44ed6_0    conda-forge
heapdict                  1.0.1                      py_0    conda-forge
hsluv                     5.0.4              pyhd8ed1ab_0    conda-forge
icu                       73.2                 h59595ed_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
imagecodecs               2023.9.18       py311h089f87a_2    conda-forge
imageio                   2.31.5             pyh8c1a49c_0    conda-forge
imageio-ffmpeg            0.4.9              pyhd8ed1ab_0    conda-forge
imagesize                 1.4.1              pyhd8ed1ab_0    conda-forge
importlib-metadata        6.8.0              pyha770c72_0    conda-forge
importlib_metadata        6.8.0                hd8ed1ab_0    conda-forge
importlib_resources       6.1.0              pyhd8ed1ab_0    conda-forge
in-n-out                  0.1.9              pyhd8ed1ab_0    conda-forge
ipykernel                 6.26.0             pyhf8b6a83_0    conda-forge
ipython                   8.17.2             pyh41d4057_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
jedi                      0.19.1             pyhd8ed1ab_0    conda-forge
jgo                       1.0.5              pyhd8ed1ab_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
jpype1                    1.4.1           py311h4dd048b_1    conda-forge
jsonschema                4.19.2             pyhd8ed1ab_0    conda-forge
jsonschema-specifications 2023.7.1           pyhd8ed1ab_0    conda-forge
jupyter_client            8.5.0              pyhd8ed1ab_0    conda-forge
jupyter_core              5.5.0           py311h38be061_0    conda-forge
jxrlib                    1.1                  h7f98852_2    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
kiwisolver                1.4.5           py311h9547e67_1    conda-forge
krb5                      1.21.2               h659d440_0    conda-forge
lame                      3.100             h166bdaf_1003    conda-forge
lazy_loader               0.3                pyhd8ed1ab_0    conda-forge
lcms2                     2.15                 hb7c19ff_3    conda-forge
ld_impl_linux-64          2.40                 h41732ed_0    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libabseil                 20230802.1      cxx17_h59595ed_0    conda-forge
libaec                    1.1.2                h59595ed_1    conda-forge
libarrow                  13.0.0          hecbb4c5_13_cpu    conda-forge
libass                    0.17.1               h8fe9dca_1    conda-forge
libavif16                 1.0.1                h87da1f6_2    conda-forge
libblas                   3.9.0           19_linux64_openblas    conda-forge
libbrotlicommon           1.1.0                hd590300_1    conda-forge
libbrotlidec              1.1.0                hd590300_1    conda-forge
libbrotlienc              1.1.0                hd590300_1    conda-forge
libcblas                  3.9.0           19_linux64_openblas    conda-forge
libcrc32c                 1.1.2                h9c3ff4c_0    conda-forge
libcups                   2.3.3                h4637d8d_4    conda-forge
libcurl                   8.4.0                hca28451_0    conda-forge
libdeflate                1.19                 hd590300_0    conda-forge
libdrm                    2.4.114              h166bdaf_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libevent                  2.1.12               hf998b51_1    conda-forge
libexpat                  2.5.0                hcb278e6_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 13.2.0               h807b86a_2    conda-forge
libgfortran-ng            13.2.0               h69a702a_2    conda-forge
libgfortran5              13.2.0               ha4646dd_2    conda-forge
libglib                   2.78.0               hebfc3b9_0    conda-forge
libgomp                   13.2.0               h807b86a_2    conda-forge
libgoogle-cloud           2.12.0               h19a6dae_3    conda-forge
libgrpc                   1.58.2               he06187c_0    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
libidn2                   2.3.4                h166bdaf_0    conda-forge
libjpeg-turbo             3.0.0                hd590300_1    conda-forge
liblapack                 3.9.0           19_linux64_openblas    conda-forge
libnghttp2                1.55.1               h47da74e_0    conda-forge
libnsl                    2.0.1                hd590300_0    conda-forge
libnuma                   2.0.16               h0b41bf4_1    conda-forge
libopenblas               0.3.24          pthreads_h413a1c8_0    conda-forge
libopus                   1.3.1                h7f98852_1    conda-forge
libpciaccess              0.17                 h166bdaf_0    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
libprotobuf               4.24.3               hf27288f_1    conda-forge
libre2-11                 2023.06.02           h7a70373_0    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libsqlite                 3.44.0               h2797004_0    conda-forge
libssh2                   1.11.0               h0841786_0    conda-forge
libstdcxx-ng              13.2.0               h7e041cc_2    conda-forge
libtasn1                  4.19.0               h166bdaf_0    conda-forge
libthrift                 0.19.0               hb90f79a_1    conda-forge
libtiff                   4.6.0                ha9c0a0a_2    conda-forge
libunistring              0.9.10               h7f98852_0    conda-forge
libutf8proc               2.8.0                h166bdaf_0    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libva                     2.20.0               hd590300_0    conda-forge
libvpx                    1.13.1               h59595ed_0    conda-forge
libwebp-base              1.3.2                hd590300_0    conda-forge
libxcb                    1.15                 h0b41bf4_0    conda-forge
libxml2                   2.11.5               h232c23b_1    conda-forge
libxslt                   1.1.37               h0054252_1    conda-forge
libzlib                   1.2.13               hd590300_5    conda-forge
libzopfli                 1.0.3                h9c3ff4c_0    conda-forge
locket                    1.0.0              pyhd8ed1ab_0    conda-forge
lxml                      4.9.3           py311h1a07684_1    conda-forge
lz4                       4.3.2           py311h38e4bf4_1    conda-forge
lz4-c                     1.9.4                hcb278e6_0    conda-forge
magicgui                  0.8.0              pyhd8ed1ab_0    conda-forge
markdown-it-py            3.0.0              pyhd8ed1ab_0    conda-forge
markupsafe                2.1.3           py311h459d7ec_1    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
maven                     3.9.5                ha770c72_0    conda-forge
mdurl                     0.1.0              pyhd8ed1ab_0    conda-forge
mrc                       0.3.1              pyhd8ed1ab_0    conda-forge
msgpack-python            1.0.6           py311h9547e67_0    conda-forge
mypy_extensions           1.0.0              pyha770c72_0    conda-forge
napari                    0.4.18             pyh9208f05_3    conda-forge
napari-aicsimageio        0.7.2              pyhd8ed1ab_1    conda-forge
napari-console            0.0.8              pyhd8ed1ab_0    conda-forge
napari-plugin-engine      0.2.0              pyhd8ed1ab_2    conda-forge
napari-svg                0.1.10             pyhd8ed1ab_0    conda-forge
ncurses                   6.4                  h59595ed_2    conda-forge
nd2                       0.8.0              pyhd8ed1ab_0    conda-forge
nest-asyncio              1.5.8              pyhd8ed1ab_0    conda-forge
nettle                    3.8.1                hc379101_1    conda-forge
networkx                  3.2.1              pyhd8ed1ab_0    conda-forge
npe2                      0.7.3              pyhd8ed1ab_0    conda-forge
numcodecs                 0.12.1          py311hb755f60_0    conda-forge
numpy                     1.26.0          py311h64a7726_0    conda-forge
numpydoc                  1.5.0              pyhd8ed1ab_0    conda-forge
ome-types                 0.4.2              pyhd8ed1ab_0    conda-forge
openh264                  2.3.1                hcb278e6_2    conda-forge
openjdk                   11.0.21              h4260e57_0    conda-forge
openjpeg                  2.5.0                h488ebb8_3    conda-forge
openssl                   3.1.4                hd590300_0    conda-forge
orc                       1.9.0                h208142c_3    conda-forge
p11-kit                   0.24.1               hc5aa10d_0    conda-forge
packaging                 23.2               pyhd8ed1ab_0    conda-forge
pandas                    2.1.2           py311h320fe9a_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
partd                     1.4.1              pyhd8ed1ab_0    conda-forge
pcre2                     10.40                hc3806b6_0    conda-forge
pexpect                   4.8.0              pyh1a96a4e_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    10.1.0          py311ha6c5da5_0    conda-forge
pint                      0.22               pyhd8ed1ab_1    conda-forge
pip                       23.3.1             pyhd8ed1ab_0    conda-forge
pixman                    0.42.2               h59595ed_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_1    conda-forge
platformdirs              3.11.0             pyhd8ed1ab_0    conda-forge
pooch                     1.8.0              pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.39             pyha770c72_0    conda-forge
prompt_toolkit            3.0.39               hd8ed1ab_0    conda-forge
psutil                    5.9.5           py311h459d7ec_1    conda-forge
psygnal                   0.9.4              pyhd8ed1ab_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
pyarrow                   13.0.0          py311h39c9aba_13_cpu    conda-forge
pyconify                  0.1.6              pyhd8ed1ab_0    conda-forge
pydantic                  1.10.13         py311h459d7ec_1    conda-forge
pygments                  2.16.1             pyhd8ed1ab_0    conda-forge
pyopengl                  3.1.6              pyhd8ed1ab_1    conda-forge
pyproject_hooks           1.0.0              pyhd8ed1ab_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
python                    3.11.6          hab00c5b_0_cpython    conda-forge
python-build              1.0.3              pyhd8ed1ab_0    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-tzdata             2023.3             pyhd8ed1ab_0    conda-forge
python_abi                3.11                    4_cp311    conda-forge
pytz                      2023.3.post1       pyhd8ed1ab_0    conda-forge
pywavelets                1.4.1           py311h1f0f07a_1    conda-forge
pyyaml                    6.0.1           py311h459d7ec_1    conda-forge
pyzmq                     25.1.1          py311h34ded2d_2    conda-forge
qtconsole-base            5.4.4              pyha770c72_0    conda-forge
qtpy                      2.4.1              pyhd8ed1ab_0    conda-forge
rav1e                     0.6.6                he8a937b_2    conda-forge
rdma-core                 28.9                 h59595ed_1    conda-forge
re2                       2023.06.02           h2873b5e_0    conda-forge
readlif                   0.6.5              pyhd8ed1ab_0    conda-forge
readline                  8.2                  h8228510_1    conda-forge
referencing               0.30.2             pyhd8ed1ab_0    conda-forge
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
resource_backed_dask_array 0.1.0              pyhd8ed1ab_1    conda-forge
rich                      13.6.0             pyhd8ed1ab_0    conda-forge
rpds-py                   0.10.6          py311h46250e7_0    conda-forge
s2n                       1.3.55               h06160fa_0    conda-forge
scikit-image              0.22.0          py311h320fe9a_2    conda-forge
scipy                     1.11.3          py311h64a7726_1    conda-forge
scyjava                   1.9.1              pyhd8ed1ab_0    conda-forge
setuptools                68.2.2             pyhd8ed1ab_0    conda-forge
shellingham               1.5.4              pyhd8ed1ab_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
snappy                    1.1.10               h9fff704_0    conda-forge
snowballstemmer           2.2.0              pyhd8ed1ab_0    conda-forge
sortedcontainers          2.4.0              pyhd8ed1ab_0    conda-forge
sphinx                    4.5.0              pyh6c4a22f_0    conda-forge
sphinxcontrib-applehelp   1.0.4              pyhd8ed1ab_0    conda-forge
sphinxcontrib-devhelp     1.0.2                      py_0    conda-forge
sphinxcontrib-htmlhelp    2.0.1              pyhd8ed1ab_0    conda-forge
sphinxcontrib-jsmath      1.0.1              pyhd8ed1ab_0    conda-forge
sphinxcontrib-qthelp      1.0.3                      py_0    conda-forge
sphinxcontrib-serializinghtml 1.1.5              pyhd8ed1ab_2    conda-forge
stack_data                0.6.2              pyhd8ed1ab_0    conda-forge
superqt                   0.6.1              pyh9208f05_0    conda-forge
svt-av1                   1.7.0                h59595ed_0    conda-forge
tblib                     2.0.0              pyhd8ed1ab_0    conda-forge
tifffile                  2023.9.26          pyhd8ed1ab_0    conda-forge
tk                        8.6.13               h2797004_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tomli-w                   1.0.0              pyhd8ed1ab_0    conda-forge
toolz                     0.12.0             pyhd8ed1ab_0    conda-forge
toposort                  1.10               pyhd8ed1ab_0    conda-forge
tornado                   6.3.3           py311h459d7ec_1    conda-forge
tqdm                      4.66.1             pyhd8ed1ab_0    conda-forge
traitlets                 5.13.0             pyhd8ed1ab_0    conda-forge
typer                     0.9.0              pyhd8ed1ab_0    conda-forge
typing-extensions         4.8.0                hd8ed1ab_0    conda-forge
typing_extensions         4.8.0              pyha770c72_0    conda-forge
tzdata                    2023c                h71feb2d_0    conda-forge
ucx                       1.15.0               h64cca9d_0    conda-forge
untokenize                0.1.1                      py_0    conda-forge
urllib3                   2.0.7              pyhd8ed1ab_0    conda-forge
vispy                     0.12.2          py311ha0e594a_0    conda-forge
wcwidth                   0.2.9              pyhd8ed1ab_0    conda-forge
wheel                     0.41.3             pyhd8ed1ab_0    conda-forge
wrapt                     1.15.0          py311h459d7ec_1    conda-forge
x264                      1!164.3095           h166bdaf_2    conda-forge
x265                      3.5                  h924138e_3    conda-forge
xarray                    2023.10.1          pyhd8ed1ab_0    conda-forge
xorg-fixesproto           5.0               h7f98852_1002    conda-forge
xorg-inputproto           2.3.2             h7f98852_1002    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.1.1                hd590300_0    conda-forge
xorg-libsm                1.2.4                h7391055_0    conda-forge
xorg-libx11               1.8.7                h8ee46fc_0    conda-forge
xorg-libxau               1.0.11               hd590300_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h0b41bf4_2    conda-forge
xorg-libxfixes            5.0.3             h7f98852_1004    conda-forge
xorg-libxi                1.7.10               h7f98852_0    conda-forge
xorg-libxrender           0.9.11               hd590300_0    conda-forge
xorg-libxt                1.3.0                hd590300_1    conda-forge
xorg-libxtst              1.2.3             h7f98852_1002    conda-forge
xorg-recordproto          1.14.2            h7f98852_1002    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h0b41bf4_1003    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xsdata                    23.8               pyhd8ed1ab_0    conda-forge
xyzservices               2023.10.1          pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
zarr                      2.16.1             pyhd8ed1ab_0    conda-forge
zeromq                    4.3.5                h59595ed_0    conda-forge
zfp                       1.0.0                h59595ed_4    conda-forge
zict                      3.0.0              pyhd8ed1ab_0    conda-forge
zipp                      3.17.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               hd590300_5    conda-forge
zlib-ng                   2.0.7                h0b41bf4_0    conda-forge
zstd                      1.5.5                hfc55251_0    conda-forge

Environment info

active environment : napari
    active env location : /home/plumail/miniforge3/envs/napari
            shell level : 1
       user config file : /home/plumail/.condarc
 populated config files : /home/plumail/miniforge3/.condarc
                          /home/plumail/.condarc
          conda version : 23.7.4
    conda-build version : 3.24.0
         python version : 3.10.13.final.0
       virtual packages : __archspec=1=x86_64
                          __cuda=12.1=0
                          __glibc=2.37=0
                          __linux=5.14.0=0
                          __unix=0=0
       base environment : /home/plumail/miniforge3  (writable)
      conda av data dir : /home/plumail/miniforge3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /home/plumail/miniforge3/pkgs
                          /home/plumail/.conda/pkgs
       envs directories : /home/plumail/miniforge3/envs
                          /home/plumail/.conda/envs
               platform : linux-64
             user-agent : conda/23.7.4 requests/2.31.0 CPython/3.10.13 Linux/5.14.0-1057-oem ubuntu/23.04 glibc/2.37 solver/libmamba conda-libmamba-solver/23.7.0 libmambapy/1.4.9
                UID:GID : 1001:1001
             netrc file : None
           offline mode : False
evamaxfield commented 11 months ago

Hey @jplumail I honestly don't know what might be going on here. Maybe @goanpeca @jaimergp or @tlambert03 might know?

I wonder if it is because these deps may be out of date? I think this might be the case due to our recent aicsimageio releases that fixed a lot of the tifffile / dep version conflict bugs + added ome-zarr: https://github.com/AllenCellModeling/aicsimageio/blob/main/setup.py#L111

I can try some dep version changes / additions and see if that fixes things but if @goanpeca @jaimergp or @tlambert03 you all have better ideas let me know.