netcdf4 v1.6.0

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Dependency Analysis

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Analysis by source code inspection shows a discrepancy between it and the the package's stated requirements in the meta.yaml.

Packages found by source code inspection but not in the meta.yaml:

• arm_pyart

Packages found in the meta.yaml but not found by source code inspection:

• cftime

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[conda-forge-linter]

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipe) and found it was in an excellent condition.

[xylar]

It looks like a lot is going wrong with PyPy:

  × Running setup.py install for netCDF4 did not run successfully.
  │ exit code: -11
  ╰─> [32 lines of output]
      reading from setup.cfg...
      Package hdf5 was not found in the pkg-config search path.
      Perhaps you should add the directory containing `hdf5.pc'
      to the PKG_CONFIG_PATH environment variable
      No package 'hdf5' found
      using nc-config...
      checking /home/conda/feedstock_root/build_artifacts/netcdf4_1656113800756/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include ...
      HDF5 library version: 1.12.1 headers found in /home/conda/feedstock_root/build_artifacts/netcdf4_1656113800756/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/include
      using netcdf library version b'4.8.1'
      using Cython to compile netCDF4.pyx...
      netcdf lib has group rename capability
      netcdf lib has nc_inq_path function
      netcdf lib has nc_inq_format_extended function
      netcdf lib has nc_open_mem function
      netcdf lib has nc_create_mem function
      netcdf lib has cdf-5 format capability
      netcdf lib has netcdf4 parallel functions
      netcdf lib does not have pnetcdf parallel functions
      netcdf lib does not have bit-grooming/quantization functions
      netcdf lib does not have zstandard compression functions
      netcdf lib does not have bzip2 compression functions
      netcdf lib does not have blosc compression functions
      netcdf lib does not have szip compression functions
      NETCDF_PLUGIN_DIR not set, no netcdf compression plugins installed
      running install
      /home/conda/feedstock_root/build_artifacts/netcdf4_1656113800756/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
        setuptools.SetuptoolsDeprecationWarning,
      running build
      running build_py
      package init file 'src/netCDF4/plugins/__init__.py' not found (or not a regular file)
      running build_ext
      cythoning src/netCDF4/_netCDF4.pyx to src/netCDF4/_netCDF4.c
      [end of output]

Anyone have the expertise to figure this out?

[honnorat]

Only MPI+mpich builds are failing with pypy. MPI+openmpi and nompi seem ok. CPython builds are OK too...

This is strange because the build complains about linking issues with hdf5 but the libnetcdf package is the same in both cases (libnetcdf 4.8.1-mpi_mpich_hcdf9059_2).

[ocefpaf]

Only MPI+mpich builds are failing with pypy. MPI+openmpi and nompi seem ok. CPython builds are OK too...

I'm inclined to merge this to "cash in" the passing ones and open an issue to investigate the rest later. @conda-forge/netcdf4 are you OK with that?

[xylar]

I'm okay with that.