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conda-forge / netcdf4-feedstock

A conda-smithy repository for netcdf4.
BSD 3-Clause "New" or "Revised" License
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ImportError: libssl.so.1.0.0: cannot open shared object file: No such file or directory #81

Closed xigrug closed 5 years ago

xigrug commented 5 years ago

Issue: from ._netCDF4 import * ImportError: libssl.so.1.0.0: cannot open shared object file: No such file or directory


Environment (conda list):

``` $ conda list ``` # Name Version Build Channel _ipyw_jlab_nb_ext_conf 0.1.0 py36he11e457_0 defaults affine 2.2.2 py_0 conda-forge alabaster 0.7.10 py36h306e16b_0 defaults altair 2.3.0 py36_1001 conda-forge altgraph 0.15 pypi_0 pypi anaconda-client 1.6.9 py36_0 defaults anaconda-navigator 1.8.4 py36_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main anaconda-project 0.8.2 py36h44fb852_0 defaults asn1crypto 0.24.0 py36_0 defaults astroid 1.6.1 py36_0 defaults astropy 2.0.3 py36h14c3975_0 defaults atomicwrites 1.1.5 pypi_0 pypi attrs 18.2.0 py_0 conda-forge babel 2.5.3 py36_0 defaults backports 1.0 py36hfa02d7e_1 defaults backports.shutil_get_terminal_size 1.0.0 py36hfea85ff_2 defaults basemap 1.2.0 py36h50ae964_0 conda-forge beautifulsoup4 4.6.0 py36h49b8c8c_1 defaults bibtexparser 1.0.1 pypi_0 pypi bitarray 0.8.1 py36h14c3975_1 defaults bkcharts 0.2 py36h735825a_0 defaults blas 1.0 mkl https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main blaze 0.11.3 py36h4e06776_0 defaults bleach 2.1.2 py36_0 defaults blosc 1.14.4 hfc679d8_0 conda-forge bokeh 0.12.13 py36h2f9c1c0_0 defaults boost-cpp 1.67.0 h3a22d5f_0 conda-forge boto 2.48.0 py36h6e4cd66_1 defaults boto3 1.9.100 py_0 conda-forge botocore 1.12.100 py_0 conda-forge bottleneck 1.2.1 py36haac1ea0_0 defaults branca 0.3.1 py_0 conda-forge bzip2 1.0.6 h9a117a8_4 defaults ca-certificates 2018.11.29 ha4d7672_0 conda-forge cairo 1.14.12 he6fea26_5 conda-forge cartopy 0.17.0 py36hd1c7146_1000 conda-forge cdsapi 0.1.1 pypi_0 pypi certifi 2018.4.16 pypi_0 pypi cf_units 2.0.1 py36_1 conda-forge cffi 1.11.4 py36h9745a5d_0 defaults cftime 1.0.0 py36_0 conda-forge chardet 3.0.4 py36h0f667ec_1 defaults cinrad 1.2 pypi_0 pypi click 7.0 py_0 conda-forge click-plugins 1.0.3 pypi_0 pypi cligj 0.4.0 pypi_0 pypi cloudpickle 0.5.2 py36_1 defaults clyent 1.2.2 py36h7e57e65_1 defaults cmocean 2.0 py_0 conda-forge colorama 0.3.9 py36h489cec4_0 defaults conda 4.6.6 py36_0 conda-forge conda-build 3.4.1 py36_0 defaults conda-env 2.6.0 h36134e3_1 defaults conda-verify 2.0.0 py36h98955d8_0 defaults contextily 1.0rc1 py_0 conda-forge contextlib2 0.5.5 py36h6c84a62_0 defaults cryptography 2.5 py36h1ba5d50_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main curl 7.63.0 hbc83047_1000 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main cycler 0.10.0 py_1 conda-forge cython 0.27.3 py36h1860423_0 defaults cytoolz 0.9.0 py36h14c3975_0 defaults dash 0.32.2 pypi_0 pypi dash-renderer 0.16.1 pypi_0 pypi dask 0.16.1 py36_0 defaults dask-core 0.16.1 py36_0 defaults datashape 0.5.4 py36h3ad6b5c_0 defaults dbus 1.13.0 h3a4f0e9_0 conda-forge decorator 4.2.1 py36_0 defaults descartes 1.1.0 py_2 conda-forge distributed 1.20.2 py36_0 defaults docopt 0.6.2 py_1 conda-forge docutils 0.14 py36_1001 conda-forge dukpy 0.2.0 pypi_0 pypi eccodes 2.8.2 ha8b302a_0 conda-forge ecmwf-api-client 1.5.0 pypi_0 pypi entrypoints 0.2.3 py36h1aec115_2 defaults et_xmlfile 1.0.1 py36hd6bccc3_0 defaults expat 2.2.5 he0dffb1_0 defaults fastcache 1.0.2 py36h14c3975_2 defaults filelock 2.0.13 py36h646ffb5_0 defaults fiona 1.7.11.post2 pypi_0 pypi flask 0.12.2 py36hb24657c_0 defaults flask-compress 1.4.0 pypi_0 pypi flask-cors 3.0.3 py36h2d857d3_0 defaults folium 0.7.0 py_0 conda-forge fontconfig 2.13.1 h2176d3f_1000 conda-forge freetype 2.9.1 h94bbf69_1005 conda-forge freexl 1.0.5 hf837533_1 conda-forge future 0.16.0 pypi_0 pypi gdal 2.2.4 py36hb00a9d7_1 conda-forge geocoder 1.38.1 pypi_0 pypi geographiclib 1.49 py_0 conda-forge geopandas 0.3.0 pypi_0 pypi geoplot 0.2.3 py_1 conda-forge geopy 1.18.1 py_0 conda-forge geos 3.6.2 1 conda-forge geotiff 1.4.2 hb54a4aa_2 conda-forge get_terminal_size 1.0.0 haa9412d_0 defaults gettext 0.19.8.1 0 conda-forge gevent 1.2.2 py36h2fe25dc_0 defaults giflib 5.1.4 h470a237_1 conda-forge glib 2.55.0 h464dc38_2 conda-forge glob2 0.6 py36he249c77_0 defaults gmp 6.1.2 h6c8ec71_1 defaults gmpy2 2.0.8 py36hc8893dd_2 defaults graphite2 1.3.10 hf63cedd_1 defaults greenlet 0.4.12 py36h2d503a6_0 defaults gst-plugins-base 1.12.4 h33fb286_0 defaults gstreamer 1.12.5 h61a6719_0 conda-forge h5netcdf 0.5.1 py_0 conda-forge h5py 2.8.0 py36h3010b51_1003 conda-forge harfbuzz 1.9.0 h08d66d9_0 conda-forge hdf4 4.2.13 0 conda-forge hdf5 1.10.2 hc401514_3 conda-forge heapdict 1.0.0 py36_2 defaults html5lib 1.0.1 py36h2f9c1c0_0 defaults icu 58.2 h9c2bf20_1 defaults idna 2.6 py36h82fb2a8_1 defaults imageio 2.2.0 py36he555465_0 defaults imagesize 0.7.1 py36h52d8127_0 defaults inflection 0.3.1 py36_0 anaconda intel-openmp 2018.0.0 hc7b2577_8 defaults ipykernel 4.8.0 py36_0 defaults ipython 6.2.1 py36h88c514a_1 defaults ipython_genutils 0.2.0 py36hb52b0d5_0 defaults ipywidgets 7.1.1 py36_0 defaults iris 2.0.0 py36_0 conda-forge isort 4.2.15 py36had401c0_0 defaults itchat 1.2.32 pypi_0 pypi itsdangerous 0.24 py36h93cc618_1 defaults jasper 1.900.1 hff1ad4c_5 conda-forge javascripthon 0.10 pypi_0 pypi jbig 2.1 hdba287a_0 defaults jdcal 1.3 py36h4c697fb_0 defaults jedi 0.11.1 py36_0 defaults jieba 0.39 pypi_0 pypi jinja2 2.10 py36ha16c418_0 defaults jmespath 0.9.3 py_1 conda-forge jpeg 9c h470a237_1 conda-forge json-c 0.12.1 h470a237_1 conda-forge jsonschema 2.6.0 py36h006f8b5_0 defaults jupyter 1.0.0 py36_4 defaults jupyter-echarts-pypkg 0.1.1 pypi_0 pypi jupyter_client 5.2.2 py36_0 defaults jupyter_console 5.2.0 py36he59e554_1 defaults jupyter_core 4.4.0 py36h7c827e3_0 defaults jupyterlab 0.31.5 py36_0 defaults jupyterlab_launcher 0.10.2 py36_0 defaults kealib 1.4.9 h0bee7d0_2 conda-forge kiwisolver 1.0.1 py36h6bb024c_1002 conda-forge krb5 1.16.1 h173b8e3_7 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main latexcodec 1.0.5 pypi_0 pypi lazy-object-proxy 1.3.1 py36h10fcdad_0 defaults libcurl 7.63.0 h20c2e04_1000 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main libdap4 3.19.1 0 conda-forge libedit 3.1.20170329 haf1bffa_1 conda-forge libffi 3.2.1 hd88cf55_4 defaults libgcc 7.2.0 h69d50b8_2 defaults libgcc-ng 7.3.0 hdf63c60_0 conda-forge libgdal 2.2.4 he036fc0_8 conda-forge libgfortran 3.0.0 1 defaults libgfortran-ng 7.2.0 h9f7466a_2 defaults libiconv 1.15 h470a237_3 conda-forge libkml 1.3.0 hccc92b1_8 conda-forge libnetcdf 4.6.1 h628ed10_200 conda-forge libopenblas 0.2.20 h9ac9557_7 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main libpng 1.6.36 h84994c4_1000 conda-forge libpq 11.1 h20c2e04_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main libprotobuf 3.5.2 0 conda-forge libpysal 4.0.1 py_0 conda-forge libsodium 1.0.15 hf101ebd_0 defaults libspatialindex 1.8.5 hfc679d8_3 conda-forge libspatialite 4.3.0a h72746d6_18 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main libssh2 1.8.0 1 conda-forge libstdcxx-ng 7.3.0 hdf63c60_0 conda-forge libtiff 4.0.9 h28f6b97_0 defaults libtool 2.4.6 h544aabb_3 defaults libuuid 2.32.1 h470a237_2 conda-forge libxcb 1.12 hcd93eb1_4 defaults libxml2 2.9.8 h422b904_5 conda-forge libxslt 1.1.32 h1312cb7_0 defaults llvmlite 0.21.0 py36ha241eea_0 defaults lml 0.0.2 pypi_0 pypi locket 0.2.0 py36h787c0ad_1 defaults lxml 4.3.1 py36h23eabaa_0 conda-forge lzo 2.10 h49e0be7_2 defaults macholib 1.9 pypi_0 pypi macropy3 1.1.0b2 pypi_0 pypi mapclassify 2.0.1 py_0 conda-forge markupsafe 1.0 py36hd9260cd_1 defaults matplotlib 3.0.2 py36_1002 conda-forge matplotlib-base 3.0.2 py36h167e16e_1002 conda-forge mccabe 0.6.1 py36h5ad9710_1 defaults mechanicalsoup 0.11.0 py_0 conda-forge mercantile 1.0.4 py_0 conda-forge metpy 0.9.2 py36_0 conda-forge mistune 0.8.3 py36_0 defaults mizani 0.4.6 py_0 conda-forge mkl 2018.0.3 1 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main mkl-service 1.1.2 py36h17a0993_4 defaults mkl_fft 1.0.10 py36_0 conda-forge mkl_random 1.0.2 py36_0 conda-forge more-itertools 4.2.0 pypi_0 pypi mpc 1.0.3 hec55b23_5 defaults mpfr 3.1.5 h11a74b3_2 defaults mpmath 1.0.0 py36hfeacd6b_2 defaults msgpack-python 0.5.1 py36h6bb024c_0 defaults multipledispatch 0.4.9 py36h41da3fb_0 defaults munch 2.3.2 pypi_0 pypi myqr 2.3.1 pypi_0 pypi navigator-updater 0.2.0 py36_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main nb_conda_kernels 2.1.1 py36_1 conda-forge nbconvert 5.3.1 py36hb41ffb7_0 defaults nbformat 4.4.0 py36h31c9010_0 defaults ncurses 6.1 hfc679d8_1 conda-forge netcdf4 1.4.1 py36ha292673_200 conda-forge networkx 2.1 py36_0 defaults nltk 3.2.5 py36h7532b22_0 defaults nose 1.3.7 py36hcdf7029_2 defaults notebook 5.4.0 py36_0 defaults numba 0.36.2 np114py36hc6662d5_0 defaults numexpr 2.6.6 py36_0 conda-forge numpy 1.15.4 py36h1d66e8a_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main numpy-base 1.15.4 py36h81de0dd_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main numpydoc 0.7.0 py36h18f165f_0 defaults odo 0.5.1 py36h90ed295_0 defaults olefile 0.46 py_0 conda-forge openblas 0.2.20 8 conda-forge openjpeg 2.3.0 h0e734dc_3 conda-forge openpyxl 2.4.10 py36_0 defaults openssl 1.1.1b h14c3975_0 conda-forge orbit-predictor 1.8.6 pypi_0 pypi owslib 0.17.1 py_0 conda-forge packaging 16.8 py36ha668100_1 defaults palettable 3.1.1 py_0 conda-forge pandas 0.24.1 py36hf484d3e_0 conda-forge pandoc 1.19.2.1 hea2e7c5_1 defaults pandocfilters 1.4.2 py36ha6701b7_1 defaults pango 1.40.14 hf0c64fd_1003 conda-forge parso 0.1.1 py36h35f843b_0 defaults partd 0.3.8 py36h36fd896_0 defaults patchelf 0.9 hf79760b_2 defaults path.py 10.5 py36h55ceabb_0 defaults pathlib2 2.3.0 py36h49efa8e_0 defaults patsy 0.5.1 py_0 conda-forge pcre 8.41 hc27e229_1 defaults pefile 2017.11.5 pypi_0 pypi pep8 1.7.1 py36_0 defaults pexpect 4.3.1 py36_0 defaults pickleshare 0.7.4 py36h63277f8_0 defaults pillow 5.4.1 py36h00a061d_1000 conda-forge pint 0.8.1 py36_0 conda-forge pip 18.1 pypi_0 pypi pixman 0.34.0 hceecf20_3 defaults pkginfo 1.4.1 py36h215d178_1 defaults plotly 3.4.2 pypi_0 pypi plotnine 0.4.0 py_0 conda-forge pluggy 0.6.0 py36hb689045_0 defaults ply 3.10 py36hed35086_0 defaults pooch 0.1.1 py36_1000 conda-forge poppler 0.67.0 h4d7e492_3 conda-forge poppler-data 0.4.9 0 conda-forge postgresql 11.1 h20c2e04_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main proj4 4.9.3 5 conda-forge prompt_toolkit 1.0.15 py36h17d85b1_0 defaults protobuf 3.5.2 py36_0 conda-forge psutil 5.4.3 py36h14c3975_0 defaults psycopg2 2.7.6.1 py36h1ba5d50_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main ptyprocess 0.5.2 py36h69acd42_0 defaults py 1.5.2 py36h29bf505_0 defaults pybtex 0.22.0 pypi_0 pypi pycodestyle 2.3.1 py36hf609f19_0 defaults pycosat 0.6.3 py36h0a5515d_0 defaults pycparser 2.18 py36hf9f622e_1 defaults pycrypto 2.6.1 py36h14c3975_7 defaults pycurl 7.43.0.2 py36h1ba5d50_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main pydap 3.2.2 py36_1000 conda-forge pyecharts 0.5.5 pypi_0 pypi pyecharts-javascripthon 0.0.6 pypi_0 pypi pyecharts-jupyter-installer 0.0.3 pypi_0 pypi pyecharts-snapshot 0.1.6 pypi_0 pypi pyepsg 0.4.0 py_0 conda-forge pyflakes 1.6.0 py36h7bd6a15_0 defaults pygments 2.2.0 py36h0d3125c_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main pygrib 2.0.3 py36h5688137_0 conda-forge pyinstaller 3.3.1 pypi_0 pypi pykdtree 1.3.1 pypi_0 pypi pyke 1.1.1 py36_0 conda-forge pylint 1.8.2 py36_0 defaults pymeteo 0.7 pypi_0 pypi pyodbc 4.0.22 py36hf484d3e_0 defaults pyopenssl 17.5.0 py36h20ba746_0 defaults pyparsing 2.3.1 py_0 conda-forge pypng 0.0.18 pypi_0 pypi pyproj 1.9.5.1 py36h2944ce7_1006 conda-forge pyqrcode 1.2.1 pypi_0 pypi pyqt 4.11.4 py36_3 conda-forge pyresample 1.10.3 pypi_0 pypi pysal 1.14.4.post2 py36_0 conda-forge pyshp 2.1.0 py_0 conda-forge pysocks 1.6.7 py36hd97a5b1_1 defaults pysplit 0.3.4 pypi_0 pypi pytables 3.4.4 py36h4f72b40_1 conda-forge pytest 3.6.0 pypi_0 pypi python 3.6.7 h0371630_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main python-dateutil 2.8.0 py_0 conda-forge python-pptx 0.6.8 py_0 conda-forge pytz 2018.9 py_0 conda-forge pywavelets 0.5.2 py36he602eb0_0 defaults pyyaml 3.12 py36hafb9ca4_1 defaults pyzmq 16.0.3 py36he2533c7_0 defaults qrcode 6.0 py_0 conda-forge qt 4.8.7 2 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free qtawesome 0.4.4 py36h609ed8c_0 defaults qtconsole 4.3.1 py36h8f73b5b_0 defaults qtpy 1.3.1 py36h3691cc8_0 defaults quandl 3.3.0 py36_0 anaconda rasterio 1.0.8 py36h1b5fcde_0 conda-forge ratelim 0.1.6 pypi_0 pypi readline 7.0 ha6073c6_4 defaults regionmask 0.4.0 pypi_0 pypi requests 2.13.0 py36_0 conda-forge retrying 1.3.3 pypi_0 pypi rope 0.10.7 py36h147e2ec_0 defaults rtree 0.8.3 py36_0 conda-forge ruamel_yaml 0.15.35 py36h14c3975_1 defaults s3transfer 0.2.0 py36_0 conda-forge scikit-image 0.13.1 py36h14c3975_1 defaults scikit-learn 0.19.1 py36hedc7406_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main scipy 1.1.0 py36hfa4b5c9_1 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main seaborn 0.9.0 py_0 conda-forge send2trash 1.4.2 py36_0 defaults setuptools 40.8.0 py36_0 conda-forge sgp4 1.4 pypi_0 pypi shapely 1.6.4 py36h0c48222_1000 conda-forge sharppy 1.3.0 pypi_0 pypi simplegeneric 0.8.1 py36_2 defaults singledispatch 3.4.0.3 py36h7a266c3_0 defaults sip 4.18 py36_1 conda-forge siphon 0.8.0 py36_1001 conda-forge six 1.12.0 py36_1000 conda-forge skewt 1.2.0 pypi_0 pypi snowballstemmer 1.2.1 py36h6febd40_0 defaults snuggs 1.4.1 py_1 conda-forge sortedcollections 0.5.3 py36h3c761f9_0 defaults sortedcontainers 1.5.9 py36_0 defaults sphinx 1.6.6 py36_0 defaults sphinxcontrib 1.0 py36h6d0f590_1 defaults sphinxcontrib-websupport 1.0.1 py36hb5cb234_1 defaults spyder 3.2.6 py36_0 defaults sqlalchemy 1.2.1 py36h14c3975_0 defaults sqlite 3.25.3 hb1c47c0_0 conda-forge statsmodels 0.9.0 py36h7eb728f_0 conda-forge sympy 1.1.1 py36hc6d1c1c_0 defaults tblib 1.3.2 py36h34cf8b6_0 defaults terminado 0.8.1 py36_1 defaults testpath 0.3.1 py36h8cadb63_0 defaults tk 8.6.9 h84994c4_1000 conda-forge toolz 0.9.0 py36_0 defaults tornado 4.5.3 py36h14c3975_1001 conda-forge traitlets 4.3.2 py36h674d592_0 defaults typing 3.6.2 py36h7da032a_0 defaults udunits2 2.2.26 1 conda-forge unicodecsv 0.14.1 py36ha668878_0 defaults unixodbc 2.3.4 hc36303a_1 defaults urllib3 1.20 py36_1 conda-forge util-linux 2.21 0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free vincent 0.4.4 py_1 conda-forge wcwidth 0.1.7 py36hdf4376a_0 defaults webencodings 0.5.1 py36h800622e_1 defaults webob 1.8.5 py_0 conda-forge werkzeug 0.14.1 py36_0 defaults wheel 0.33.1 py36_0 conda-forge widgetsnbextension 3.1.0 py36_0 defaults wordcloud 1.4.1 py36_0 conda-forge wrapt 1.10.11 py36h28b7045_0 defaults wrf-python 1.3.0 py36h18b3941_0 conda-forge wxpy 0.3.9.8 pypi_0 pypi xarray 0.10.7 py36_0 conda-forge xerces-c 3.2.0 0 conda-forge xlrd 1.1.0 py36h1db9f0c_1 defaults xlsxwriter 1.0.2 py36h3de1aca_0 defaults xlwt 1.3.0 py36h7b00a1f_0 defaults xorg-kbproto 1.0.7 h470a237_2 conda-forge xorg-libice 1.0.9 h470a237_4 conda-forge xorg-libsm 1.2.3 h8c8a85c_0 conda-forge xorg-libx11 1.6.6 h470a237_0 conda-forge xorg-libxext 1.3.3 h470a237_4 conda-forge xorg-libxrender 0.9.10 h470a237_2 conda-forge xorg-renderproto 0.11.1 h470a237_2 conda-forge xorg-xextproto 7.3.0 h470a237_2 conda-forge xorg-xproto 7.0.31 h470a237_7 conda-forge xz 5.2.4 h470a237_1 conda-forge yaml 0.1.7 had09818_2 defaults zeromq 4.2.2 hbedb6e5_2 defaults zict 0.1.3 py36h3a3bf81_0 defaults zlib 1.2.11 ha838bed_2 defaults
Details about conda and system ( conda info ): conda 4.6.6 Linux admin 3.10.0-693.el7.x86_64 #1 SMP Tue Aug 22 21:09:27 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux ``` $ conda info ``` active environment : None shell level : 0 user config file : /public/home/hysplit/.condarc populated config files : /public/home/hysplit/.condarc conda version : 4.6.6 conda-build version : 3.4.1 python version : 3.6.7.final.0 base environment : /public/home/hysplit/software/anaconda3 (writable) channel URLs : https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/linux-64 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/noarch https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/linux-64 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/free/linux-64 https://repo.anaconda.com/pkgs/free/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /public/home/hysplit/software/anaconda3/pkgs /public/home/hysplit/.conda/pkgs envs directories : /public/home/hysplit/software/anaconda3/envs /public/home/hysplit/.conda/envs platform : linux-64 user-agent : conda/4.6.6 requests/2.13.0 CPython/3.6.7 Linux/3.10.0-693.el7.x86_64 centos/7.4.1708 glibc/2.17 UID:GID : 1006:100 netrc file : /public/home/hysplit/.netrc offline mode : False
xylar commented 5 years ago

libgcc-ng 7.3.0 from conda-forge is currently marked as broken. The only way to install netcdf4=1.4.1 currently is to include the current libgcc-ng from the defaults channel. Could you try creating a new environment as follows and see if you are able to import netcdf4 successfully there?

$ conda create -n test_netcdf4 -c conda-forge -c defaults python=3.6 netcdf4=1.4.1
...
The following NEW packages will be INSTALLED:
...
  libgcc-ng          pkgs/main/linux-64::libgcc-ng-8.2.0-hdf63c60_1
...
  netcdf4            conda-forge/linux-64::netcdf4-1.4.1-py36ha292673_200
...
$ conda activate test_netcdf4
$ python -c "import netCDF4"

That worked successfully for me. If that works for you, I'm afraid your best option might be to build a new environment with a different libgcc. It looks like you've got a lot of packages installed in your current one so that might take some time but I doubt you will have much success if you just try to reinstall packages in your current environment even if you replace the broken libgcc-ng and other packages.

@ocefpaf, would your advice be any different?

ocefpaf commented 5 years ago

The problem is not libgcc but the fact that the package is too old and the openssl migrated to a new version. We won't rebuild netcdf4 1.4.1 with latest openssl I recommend you to upgrade your version.

ivanomarot commented 5 years ago

Hello! I am also having this problem in netcdf4 version 1.5.0.1.

from ._netCDF4 import * ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory

What is the version for the new openssl?

[root@mtl-hdops01d ~]# ls -lrth /hadoop/opt/anaconda3-5.0.1/lib/|grep -i cryp -rwxrwxr-x 2 otdsi-dev-bot hadoop 135K Feb 26 13:17 libk5crypto.so.3.1 lrwxrwxrwx 1 otdsi-dev-bot hadoop 18 Apr 22 05:45 libk5crypto.so.3 -> libk5crypto.so.3.1 lrwxrwxrwx 1 otdsi-dev-bot hadoop 18 Apr 22 05:45 libk5crypto.so -> libk5crypto.so.3.1 -rwxrwxr-x 1 otdsi-dev-bot hadoop 6.4M Apr 22 07:40 libcrypto.a -rwxrwxr-x 1 otdsi-dev-bot hadoop 3.3M Apr 22 07:40 libcrypto.so.1.1 lrwxrwxrwx 1 otdsi-dev-bot hadoop 16 Apr 22 07:40 libcrypto.so -> libcrypto.so.1.1

ocefpaf commented 5 years ago

Hello! I am also having this problem in netcdf4 version 1.5.0.1.

Please open a new issue with provide all the information requested in the issue boilerplate. We cannot help without that information. BTW, a fresh installation works for me on Linux:

conda create --name TEST python=3.7 netcdf4
conda activate TEST
python -c "import netCDF4; print(netCDF4.__version__)"    
1.5.0.1

Also see https://conda-forge.org/docs/user/tipsandtricks.html#how-to-fix-it