search

conda-forge / osmnx-feedstock

A conda-smithy repository for osmnx.
BSD 3-Clause "New" or "Revised" License
8 stars 7 forks source link

Error importing osmnx installed with conda #58

Closed adrianelizalde closed 4 years ago

adrianelizalde commented 4 years ago

Issue: I installed OSMnx through conda:

conda config --prepend channels conda-forge
conda create -n ox --strict-channel-priority osmnx

No able to import osmnx

import osmnx os

ImportError Traceback (most recent call last)

in ----> 1 import osmnx as ox /opt/anaconda3/envs/ox/lib/python3.8/site-packages/osmnx/__init__.py in 7 ################################################################################ 8 ----> 9 from .core import * 10 from .downloader import * 11 from .elevation import * /opt/anaconda3/envs/ox/lib/python3.8/site-packages/osmnx/core.py in 7 ################################################################################ 8 ----> 9 import geopandas as gpd 10 import logging as lg 11 import math /opt/anaconda3/envs/ox/lib/python3.8/site-packages/geopandas/__init__.py in 3 from geopandas.array import _points_from_xy as points_from_xy # noqa 4 ----> 5 from geopandas.io.file import read_file # noqa 6 from geopandas.io.sql import read_postgis # noqa 7 from geopandas.tools import sjoin # noqa /opt/anaconda3/envs/ox/lib/python3.8/site-packages/geopandas/io/file.py in 4 import pandas as pd 5 ----> 6 import fiona 7 from shapely.geometry import mapping 8 from shapely.geometry.base import BaseGeometry /opt/anaconda3/envs/ox/lib/python3.8/site-packages/fiona/__init__.py in 82 os.environ["PATH"] = os.environ["PATH"] + ";" + libdir 83 ---> 84 from fiona.collection import BytesCollection, Collection 85 from fiona.drvsupport import supported_drivers 86 from fiona.env import ensure_env_with_credentials, Env /opt/anaconda3/envs/ox/lib/python3.8/site-packages/fiona/collection.py in 7 8 from fiona import compat, vfs ----> 9 from fiona.ogrext import Iterator, ItemsIterator, KeysIterator 10 from fiona.ogrext import Session, WritingSession 11 from fiona.ogrext import buffer_to_virtual_file, remove_virtual_file, GEOMETRY_TYPES ImportError: dlopen(/opt/anaconda3/envs/ox/lib/python3.8/site-packages/fiona/ogrext.cpython-38-darwin.so, 2): Library not loaded: @rpath/libnetcdf.15.dylib Referenced from: /opt/anaconda3/envs/ox/lib/libgdal.26.dylib Reason: image not found
Environment (conda list):
``` $ conda list ```
Details about conda and system ( conda info ): # Name Version Build Channel _ipyw_jlab_nb_ext_conf 0.1.0 py37_0 alabaster 0.7.12 py37_0 anaconda 2019.10 py37_0 anaconda-client 1.7.2 py37_0 anaconda-navigator 1.9.7 py37_0 anaconda-project 0.8.3 py_0 appnope 0.1.0 py37_0 appscript 1.1.0 py37h1de35cc_0 asn1crypto 1.0.1 py37_0 astroid 2.3.1 py37_0 astropy 3.2.2 py37h1de35cc_0 atomicwrites 1.3.0 py37_1 attrs 19.2.0 py_0 babel 2.7.0 py_0 backcall 0.1.0 py37_0 backports 1.0 py_2 backports.functools_lru_cache 1.5 py_2 backports.os 0.1.1 py37_0 backports.shutil_get_terminal_size 1.0.0 py37_2 backports.tempfile 1.0 py_1 backports.weakref 1.0.post1 py_1 beautifulsoup4 4.8.0 py37_0 bitarray 1.0.1 py37h1de35cc_0 bkcharts 0.2 py37_0 blas 1.0 mkl bleach 3.1.0 py37_0 blosc 1.16.3 hd9629dc_0 bokeh 1.3.4 py37_0 boost-cpp 1.70.0 hd59e818_1 conda-forge boto 2.49.0 py37_0 bottleneck 1.2.1 py37h1d22016_1 bzip2 1.0.8 h1de35cc_0 ca-certificates 2019.8.28 0 cachetools 4.0.0 pypi_0 pypi cairo 1.14.12 h9d4d9ac_1005 conda-forge certifi 2019.9.11 py37_0 conda-forge cffi 1.12.3 py37hb5b8e2f_0 chardet 3.0.4 py37_1003 click 6.7 pypi_0 pypi click-plugins 1.1.1 pypi_0 pypi cligj 0.5.0 pypi_0 pypi cloudpickle 1.2.2 py_0 clyent 1.2.2 py37_1 colorama 0.4.1 py37_0 conda 4.8.3 py37hc8dfbb8_0 conda-forge conda-build 3.18.9 py37_3 conda-env 2.6.0 1 conda-package-handling 1.6.0 py37h1de35cc_0 conda-verify 3.4.2 py_1 contextlib2 0.6.0 py_0 cryptography 2.7 py37ha12b0ac_0 cssselect 1.1.0 pypi_0 pypi curl 7.65.3 ha441bb4_0 cycler 0.10.0 py37_0 cython 0.29.13 py37h0a44026_0 cytoolz 0.10.0 py37h1de35cc_0 dask 2.5.2 py_0 dask-core 2.5.2 py_0 dbus 1.13.6 h90a0687_0 decorator 4.4.0 py37_1 defusedxml 0.6.0 py_0 distributed 2.5.2 py_0 docutils 0.15.2 py37_0 entrypoints 0.3 py37_0 et_xmlfile 1.0.1 py37_0 expat 2.2.6 h0a44026_0 fastcache 1.1.0 py37h1de35cc_0 filelock 3.0.12 py_0 fiona 1.8.13.post1 pypi_0 pypi flask 1.1.1 py_0 fontconfig 2.13.1 h1027ab8_1000 conda-forge freetype 2.9.1 hb4e5f40_0 freexl 1.0.5 h1de35cc_1002 conda-forge fsspec 0.5.2 py_0 future 0.17.1 py37_0 gdal 2.3.3 py37hbe65578_0 geoalchemy2 0.6.3 pypi_0 pypi geomancer 1.1.0 pypi_0 pypi geopandas 0.7.0 pypi_0 pypi geos 3.7.1 h0a44026_1000 conda-forge get_terminal_size 1.0.0 h7520d66_0 gettext 0.19.8.1 h15daf44_3 gevent 1.4.0 py37h1de35cc_0 giflib 5.1.7 h01d97ff_1 conda-forge glib 2.56.2 hd9629dc_0 glob2 0.7 py_0 gmp 6.1.2 hb37e062_1 gmpy2 2.0.8 py37h6ef4df4_2 google-api-core 1.16.0 pypi_0 pypi google-auth 1.11.3 pypi_0 pypi google-cloud-bigquery 1.9.0 pypi_0 pypi google-cloud-core 0.29.1 pypi_0 pypi google-resumable-media 0.5.0 pypi_0 pypi googleapis-common-protos 1.51.0 pypi_0 pypi greenlet 0.4.15 py37h1de35cc_0 h5py 2.9.0 py37h3134771_0 hdf4 4.2.13 0 conda-forge hdf5 1.10.4 hfa1e0ec_0 heapdict 1.0.1 py_0 html5lib 1.0.1 py37_0 icu 58.2 h4b95b61_1 idna 2.7 pypi_0 pypi imageio 2.6.0 py37_0 imagesize 1.1.0 py37_0 importlib_metadata 0.23 py37_0 intel-openmp 2019.4 233 ipykernel 5.1.2 py37h39e3cac_0 ipython 7.8.0 py37h39e3cac_0 ipython_genutils 0.2.0 py37_0 ipywidgets 7.5.1 py_0 isort 4.3.21 py37_0 itsdangerous 0.24 pypi_0 pypi jbig 2.1 h4d881f8_0 jdcal 1.4.1 py_0 jedi 0.15.1 py37_0 jinja2 2.10.3 py_0 joblib 0.13.2 py37_0 jpeg 9b he5867d9_2 json-c 0.13.1 h1de35cc_1001 conda-forge json5 0.8.5 py_0 jsonschema 3.0.2 py37_0 jupyter 1.0.0 py37_7 jupyter_client 5.3.3 py37_1 jupyter_console 6.0.0 py37_0 jupyter_core 4.5.0 py_0 jupyterlab 1.1.4 pyhf63ae98_0 jupyterlab_server 1.0.6 py_0 kealib 1.4.7 hf5ed860_6 keyring 18.0.0 py37_0 kiwisolver 1.1.0 py37h0a44026_0 krb5 1.16.1 hddcf347_7 lazy-object-proxy 1.4.2 py37h1de35cc_0 libarchive 3.3.3 h786848e_5 libcurl 7.65.3 h051b688_0 libcxx 4.0.1 hcfea43d_1 libcxxabi 4.0.1 hcfea43d_1 libdap4 3.19.1 hae55d67_1000 conda-forge libedit 3.1.20181209 hb402a30_0 libffi 3.2.1 h475c297_4 libgdal 2.3.3 h0950a36_0 libgfortran 3.0.1 h93005f0_2 libiconv 1.15 hdd342a3_7 libkml 1.3.0 hed7d534_1010 conda-forge liblief 0.9.0 h2a1bed3_2 libnetcdf 4.6.1 hd5207e6_2 libpng 1.6.37 ha441bb4_0 libpq 11.2 h051b688_0 libsodium 1.0.16 h3efe00b_0 libspatialite 4.3.0a h0cd9627_1026 conda-forge libssh2 1.8.2 ha12b0ac_0 libtiff 4.0.10 hcb84e12_2 libxml2 2.9.9 hf6e021a_1 libxslt 1.1.33 h33a18ac_0 llvm-openmp 4.0.1 hcfea43d_1 llvmlite 0.29.0 py37h98b8051_0 locket 0.2.0 py37_1 loguru 0.4.1 pypi_0 pypi lxml 4.4.1 py37hef8c89e_0 lz4-c 1.8.1.2 h1de35cc_0 lzo 2.10 h362108e_2 markupsafe 0.23 pypi_0 pypi matplotlib 3.1.1 py37h54f8f79_0 mccabe 0.6.1 py37_1 mistune 0.8.4 py37h1de35cc_0 mkl 2019.4 233 mkl-service 2.3.0 py37hfbe908c_0 mkl_fft 1.0.14 py37h5e564d8_0 mkl_random 1.1.0 py37ha771720_0 mock 3.0.5 py37_0 more-itertools 7.2.0 py37_0 mpc 1.1.0 h6ef4df4_1 mpfr 4.0.1 h3018a27_3 mpmath 1.1.0 py37_0 msgpack-python 0.6.1 py37h04f5b5a_1 multipledispatch 0.6.0 py37_0 munch 2.5.0 pypi_0 pypi navigator-updater 0.2.1 py37_0 nbconvert 5.6.0 py37_1 nbformat 4.4.0 py37_0 ncurses 6.1 h0a44026_1 networkx 2.3 py_0 nltk 3.4.5 py37_0 nose 1.3.7 py37_2 notebook 6.0.1 py37_0 numba 0.45.1 py37h6440ff4_0 numexpr 2.7.0 py37h7413580_0 numpy 1.17.2 py37h99e6662_0 numpy-base 1.17.2 py37h6575580_0 numpydoc 0.9.1 py_0 oauthlib 3.1.0 pypi_0 pypi olefile 0.46 py37_0 openjpeg 2.3.1 hdc36067_1 conda-forge openpyxl 3.0.0 py_0 openssl 1.1.1d h1de35cc_2 packaging 19.2 py_0 pandas 0.25.1 py37h0a44026_0 pandoc 2.2.3.2 0 pandocfilters 1.4.2 py37_1 parsel 1.5.2 pypi_0 pypi parso 0.5.1 py_0 partd 1.0.0 py_0 path.py 12.0.1 py_0 pathlib2 2.3.5 py37_0 patsy 0.5.1 py37_0 pcre 8.43 h0a44026_0 pep8 1.7.1 py37_0 pexpect 4.7.0 py37_0 pickleshare 0.7.5 py37_0 pillow 6.2.0 py37hb68e598_0 pip 19.2.3 py37_0 pixman 0.34.0 h1de35cc_1003 conda-forge pkginfo 1.5.0.1 py37_0 plaid-python 3.4.0 pypi_0 pypi pluggy 0.13.0 py37_0 ply 3.11 py37_0 poppler 0.65.0 ha097c24_1 poppler-data 0.4.9 1 conda-forge proj4 5.2.0 h6de7cb9_1006 conda-forge prometheus_client 0.7.1 py_0 prompt_toolkit 2.0.10 py_0 protobuf 3.11.3 pypi_0 pypi psutil 5.6.3 py37h1de35cc_0 ptyprocess 0.6.0 py37_0 py 1.8.0 py37_0 py-lief 0.9.0 py37h1413db1_2 pyarrow 0.12.1 pypi_0 pypi pyasn1 0.4.8 pypi_0 pypi pyasn1-modules 0.2.8 pypi_0 pypi pybigquery 0.4.14 pypi_0 pypi pycodestyle 2.5.0 py37_0 pycosat 0.6.3 py37h1de35cc_0 pycparser 2.19 py37_0 pycrypto 2.6.1 py37h1de35cc_9 pycurl 7.43.0.3 py37ha12b0ac_0 pyflakes 2.1.1 py37_0 pygments 2.4.2 py_0 pylint 2.4.2 py37_0 pyodbc 4.0.27 py37h0a44026_0 pyopenssl 19.0.0 py37_0 pyparsing 2.4.2 py_0 pyproj 2.6.0 pypi_0 pypi pyqt 5.9.2 py37h655552a_2 pyrsistent 0.15.4 py37h1de35cc_0 pysocks 1.7.1 py37_0 pytables 3.5.2 py37h5bccee9_1 pytest 5.2.1 py37_0 pytest-arraydiff 0.3 py37h39e3cac_0 pytest-astropy 0.5.0 py37_0 pytest-doctestplus 0.4.0 py_0 pytest-openfiles 0.4.0 py_0 pytest-remotedata 0.3.2 py37_0 python 3.7.4 h359304d_1 python-dateutil 2.8.0 py37_0 python-libarchive-c 2.8 py37_13 python-linkedin-v2 0.9.4 pypi_0 pypi python.app 2 py37_9 python3-linkedin 1.0.2 pypi_0 pypi python_abi 3.7 1_cp37m conda-forge pytz 2019.3 py_0 pywavelets 1.0.3 py37h1d22016_1 pyyaml 5.1.2 py37h1de35cc_0 pyzmq 18.1.0 py37h0a44026_0 qt 5.9.7 h468cd18_1 qtawesome 0.6.0 py_0 qtconsole 4.5.5 py_0 qtpy 1.9.0 py_0 readline 7.0 h1de35cc_5 requests 2.20.0 pypi_0 pypi requests-oauthlib 1.3.0 pypi_0 pypi ripgrep 0.10.0 hc07d326_0 rope 0.14.0 py_0 rsa 4.0 pypi_0 pypi ruamel_yaml 0.15.46 py37h1de35cc_0 scikit-image 0.15.0 py37h0a44026_0 scikit-learn 0.21.3 py37h27c97d8_0 scipy 1.3.1 py37h1410ff5_0 seaborn 0.9.0 py37_0 selenium 3.141.0 pypi_0 pypi send2trash 1.5.0 py37_0 setuptools 41.4.0 py37_0 shapely 1.7.0 pypi_0 pypi simplegeneric 0.8.1 py37_2 singledispatch 3.4.0.3 py37_0 sip 4.19.8 py37h0a44026_0 six 1.12.0 py37_0 snappy 1.1.7 he62c110_3 snowballstemmer 2.0.0 py_0 sortedcollections 1.1.2 py37_0 sortedcontainers 2.1.0 py37_0 soupsieve 1.9.3 py37_0 sphinx 2.2.0 py_0 sphinxcontrib 1.0 py37_1 sphinxcontrib-applehelp 1.0.1 py_0 sphinxcontrib-devhelp 1.0.1 py_0 sphinxcontrib-htmlhelp 1.0.2 py_0 sphinxcontrib-jsmath 1.0.1 py_0 sphinxcontrib-qthelp 1.0.2 py_0 sphinxcontrib-serializinghtml 1.1.3 py_0 sphinxcontrib-websupport 1.1.2 py_0 spyder 3.3.6 py37_0 spyder-kernels 0.5.2 py37_0 sqlalchemy 1.3.2 pypi_0 pypi sqlite 3.30.0 ha441bb4_0 statsmodels 0.10.1 py37h1d22016_0 sympy 1.4 py37_0 tbb 2019.8 h04f5b5a_0 tblib 1.4.0 py_0 terminado 0.8.2 py37_0 testpath 0.4.2 py37_0 tk 8.6.8 ha441bb4_0 toolz 0.10.0 py_0 tornado 6.0.3 py37h1de35cc_0 tqdm 4.36.1 py_0 traitlets 4.3.3 py37_0 unicodecsv 0.14.1 py37_0 unixodbc 2.3.7 h1de35cc_0 urllib3 1.24.2 py37_0 w3lib 1.21.0 pypi_0 pypi wcwidth 0.1.7 py37_0 webencodings 0.5.1 py37_1 werkzeug 0.16.0 py_0 wheel 0.33.6 py37_0 widgetsnbextension 3.5.1 py37_0 wrapt 1.11.2 py37h1de35cc_0 wurlitzer 1.0.3 py37_0 xerces-c 3.2.2 h4db8090_1003 conda-forge xlrd 1.2.0 py37_0 xlsxwriter 1.2.1 py_0 xlwings 0.15.10 py37_0 xlwt 1.3.0 py37_0 xz 5.2.4 h1de35cc_4 yaml 0.1.7 hc338f04_2 zeromq 4.3.1 h0a44026_3 zict 1.0.0 py_0 zipp 0.6.0 py_0 zlib 1.2.11 h1de35cc_3 zstd 1.3.7 h5bba6e5_0
``` $ conda info ``` active environment : base active env location : /opt/anaconda3 shell level : 1 user config file : /Users/tatiananinpeco/.condarc populated config files : /Users/tatiananinpeco/.condarc conda version : 4.8.3 conda-build version : 3.18.9 python version : 3.7.4.final.0 virtual packages : __osx=10.12.6 base environment : /opt/anaconda3 (writable) channel URLs : https://conda.anaconda.org/conda-forge/osx-64 https://conda.anaconda.org/conda-forge/noarch https://repo.anaconda.com/pkgs/main/osx-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/osx-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /opt/anaconda3/pkgs /Users/tatiananinpeco/.conda/pkgs envs directories : /opt/anaconda3/envs /Users/tatiananinpeco/.conda/envs platform : osx-64 user-agent : conda/4.8.3 requests/2.20.0 CPython/3.7.4 Darwin/16.7.0 OSX/10.12.6 UID:GID : 501:20 netrc file : /Users/tatiananinpeco/.netrc offline mode : False
ocefpaf commented 4 years ago

https://github.com/conda-forge/conda-forge-repodata-patches-feedstock/pull/39 should fix this.

ocefpaf commented 4 years ago

Should be solved now.