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conda-forge / petsc-feedstock

A conda-smithy repository for petsc.
BSD 3-Clause "New" or "Revised" License
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scotch 7.0.4 #181

Closed minrk closed 9 months ago

minrk commented 9 months ago

I believe this will fix #180

conda-forge-webservices[bot] commented 9 months ago

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipe) and found it was in an excellent condition.

minrk commented 9 months ago

Confirmed with a local build that this fixes #180, at least with these two envs:

before:

# packages in environment at /Users/minrk/conda/envs/petsc-before:
#
# Name                    Version                   Build  Channel
bzip2                     1.0.8                h93a5062_5    conda-forge
c-ares                    1.23.0               h93a5062_0    conda-forge
ca-certificates           2023.11.17           hf0a4a13_0    conda-forge
fftw                      3.3.10          mpi_openmpi_haef8dc3_8    conda-forge
gmp                       6.3.0                h965bd2d_0    conda-forge
hdf5                      1.14.3          mpi_openmpi_h20f603a_0    conda-forge
hypre                     2.28.0          mpi_openmpi_haba3941_0    conda-forge
icu                       73.2                 hc8870d7_0    conda-forge
krb5                      1.21.2               h92f50d5_0    conda-forge
libaec                    1.1.2                h13dd4ca_1    conda-forge
libblas                   3.9.0           20_osxarm64_openblas    conda-forge
libcblas                  3.9.0           20_osxarm64_openblas    conda-forge
libcurl                   8.5.0                h2d989ff_0    conda-forge
libcxx                    16.0.6               h4653b0c_0    conda-forge
libedit                   3.1.20191231         hc8eb9b7_2    conda-forge
libev                     4.33                 h93a5062_2    conda-forge
libexpat                  2.5.0                hb7217d7_1    conda-forge
libffi                    3.4.2                h3422bc3_5    conda-forge
libgfortran               5.0.0           13_2_0_hd922786_1    conda-forge
libgfortran5              13.2.0               hf226fd6_1    conda-forge
libhwloc                  2.9.3           default_h4394839_1009    conda-forge
libiconv                  1.17                 he4db4b2_0    conda-forge
liblapack                 3.9.0           20_osxarm64_openblas    conda-forge
libnghttp2                1.58.0               ha4dd798_1    conda-forge
libopenblas               0.3.25          openmp_h6c19121_0    conda-forge
libptscotch               7.0.2                h4ec5e76_0    conda-forge
libscotch                 7.0.2                h80c162b_0    conda-forge
libsqlite                 3.44.2               h091b4b1_0    conda-forge
libssh2                   1.11.0               h7a5bd25_0    conda-forge
libxml2                   2.11.6               h0d0cfa8_0    conda-forge
libzlib                   1.2.13               h53f4e23_5    conda-forge
llvm-openmp               17.0.6               hcd81f8e_0    conda-forge
metis                     5.1.1                h965bd2d_2    conda-forge
mpfr                      4.2.1                h9546428_0    conda-forge
mpi                       1.0                     openmpi    conda-forge
mumps-include             5.2.1               hce30654_13    conda-forge
mumps-mpi                 5.2.1               h00b355f_13    conda-forge
ncurses                   6.4                  h463b476_2    conda-forge
numpy                     1.26.2          py312h5d55045_0    conda-forge
openmpi                   4.1.6              h526c993_101    conda-forge
openssl                   3.2.0                h0d3ecfb_1    conda-forge
parmetis                  4.0.3             h6eb5794_1005    conda-forge
petsc                     3.20.2          real_hccb9628_102    conda-forge
petsc4py                  3.20.1          real_h17b5e51_100    conda-forge
pip                       23.3.1             pyhd8ed1ab_0    conda-forge
ptscotch                  7.0.2                hc1c4572_0    conda-forge
python                    3.12.0          h47c9636_0_cpython    conda-forge
python_abi                3.12                    4_cp312    conda-forge
readline                  8.2                  h92ec313_1    conda-forge
scalapack                 2.2.0                h515df86_1    conda-forge
scotch                    7.0.2                hc1c4572_0    conda-forge
setuptools                68.2.2             pyhd8ed1ab_0    conda-forge
suitesparse               5.10.1               h88be0ae_2    conda-forge
superlu                   5.2.2                hc615359_0    conda-forge
tbb                       2021.11.0            h6aa02a4_0    conda-forge
tk                        8.6.13               h5083fa2_1    conda-forge
tzdata                    2023c                h71feb2d_0    conda-forge
wheel                     0.42.0             pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h57fd34a_0    conda-forge
yaml                      0.2.5                h3422bc3_2    conda-forge
zlib                      1.2.13               h53f4e23_5    conda-forge
zstd                      1.5.5                h4f39d0f_0    conda-forge

after:

# packages in environment at /Users/minrk/conda/envs/petsc-after:
#
# Name                    Version                   Build  Channel
bzip2                     1.0.8                h93a5062_5    conda-forge
c-ares                    1.23.0               h93a5062_0    conda-forge
ca-certificates           2023.11.17           hf0a4a13_0    conda-forge
fftw                      3.3.10          mpi_mpich_h0cb5807_8    conda-forge
gmp                       6.3.0                h965bd2d_0    conda-forge
hdf5                      1.14.3          mpi_mpich_h754b83b_0    conda-forge
hypre                     2.28.0          mpi_mpich_hd226f01_0    conda-forge
icu                       73.2                 hc8870d7_0    conda-forge
krb5                      1.21.2               h92f50d5_0    conda-forge
libaec                    1.1.2                h13dd4ca_1    conda-forge
libblas                   3.9.0           20_osxarm64_openblas    conda-forge
libcblas                  3.9.0           20_osxarm64_openblas    conda-forge
libcurl                   8.5.0                h2d989ff_0    conda-forge
libcxx                    16.0.6               h4653b0c_0    conda-forge
libedit                   3.1.20191231         hc8eb9b7_2    conda-forge
libev                     4.33                 h93a5062_2    conda-forge
libexpat                  2.5.0                hb7217d7_1    conda-forge
libffi                    3.4.2                h3422bc3_5    conda-forge
libgfortran               5.0.0           13_2_0_hd922786_1    conda-forge
libgfortran5              13.2.0               hf226fd6_1    conda-forge
libhwloc                  2.9.3           default_h4394839_1009    conda-forge
libiconv                  1.17                 h0d3ecfb_1    conda-forge
liblapack                 3.9.0           20_osxarm64_openblas    conda-forge
libnghttp2                1.58.0               ha4dd798_1    conda-forge
libopenblas               0.3.25          openmp_h6c19121_0    conda-forge
libptscotch               7.0.4                h5340af2_0    conda-forge
libscotch                 7.0.4                hc938e73_0    conda-forge
libsqlite                 3.44.2               h091b4b1_0    conda-forge
libssh2                   1.11.0               h7a5bd25_0    conda-forge
libxml2                   2.11.6               h0d0cfa8_0    conda-forge
libzlib                   1.2.13               h53f4e23_5    conda-forge
llvm-openmp               17.0.6               hcd81f8e_0    conda-forge
metis                     5.1.1                h965bd2d_2    conda-forge
mpfr                      4.2.1                h9546428_0    conda-forge
mpi                       1.0                       mpich    conda-forge
mpich                     4.1.2              hd4b5bf3_100    conda-forge
mumps-include             5.2.1               hce30654_14    conda-forge
mumps-mpi                 5.2.1               hfea86b6_14    conda-forge
ncurses                   6.4                  h463b476_2    conda-forge
numpy                     1.26.2          py312h5d55045_0    conda-forge
openssl                   3.2.0                h0d3ecfb_1    conda-forge
parmetis                  4.0.3             hefa2a9d_1005    conda-forge
petsc                     3.20.2          real_he7031e6_104    local
petsc4py                  3.20.1          real_ha8516f6_100    conda-forge
pip                       23.3.1             pyhd8ed1ab_0    conda-forge
ptscotch                  7.0.4                heaa5b5c_0    conda-forge
python                    3.12.0          h47c9636_0_cpython    conda-forge
python_abi                3.12                    4_cp312    conda-forge
readline                  8.2                  h92ec313_1    conda-forge
scalapack                 2.2.0                hb170938_1    conda-forge
scotch                    7.0.4                heaa5b5c_0    conda-forge
setuptools                68.2.2             pyhd8ed1ab_0    conda-forge
suitesparse               5.10.1               h88be0ae_2    conda-forge
superlu                   5.2.2                hc615359_0    conda-forge
superlu_dist              8.2.1                h6be7e34_0    conda-forge
tbb                       2021.11.0            h6aa02a4_0    conda-forge
tk                        8.6.13               h5083fa2_1    conda-forge
tzdata                    2023c                h71feb2d_0    conda-forge
wheel                     0.42.0             pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h57fd34a_0    conda-forge
yaml                      0.2.5                h3422bc3_2    conda-forge
zlib                      1.2.13               h53f4e23_5    conda-forge
zstd                      1.5.5                h4f39d0f_0    conda-forge

with output:

> conda run -n petsc-before python3 -c 'from petsc4py import PETSc; print("OK")'
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/Users/minrk/conda/envs/petsc-before/lib/python3.12/site-packages/petsc4py/PETSc.py", line 3, in <module>
    PETSc = ImportPETSc(ARCH)
            ^^^^^^^^^^^^^^^^^
  File "/Users/minrk/conda/envs/petsc-before/lib/python3.12/site-packages/petsc4py/lib/__init__.py", line 29, in ImportPETSc
    return Import('petsc4py', 'PETSc', path, arch)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/minrk/conda/envs/petsc-before/lib/python3.12/site-packages/petsc4py/lib/__init__.py", line 95, in Import
    module = import_module(pkg, name, path, arch)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/minrk/conda/envs/petsc-before/lib/python3.12/site-packages/petsc4py/lib/__init__.py", line 71, in import_module
    module = importlib.util.module_from_spec(spec)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ImportError: dlopen(/Users/minrk/conda/envs/petsc-before/lib/python3.12/site-packages/petsc4py/lib/PETSc.cpython-312-darwin.so, 0x0002): symbol not found in flat namespace '_SCOTCH_errorPrint'

ERROR conda.cli.main_run:execute(124): `conda run python3 -c from petsc4py import PETSc; print("OK")` failed. (See above for error)

> conda run -n petsc-after python3 -c 'from petsc4py import PETSc; print("OK")'
OK