pygmt v0.5.0

[regro-cf-autotick-bot]

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Dependency Analysis

Please note that this analysis is highly experimental. The aim here is to make maintenance easier by inspecting the package's dependencies. Importantly this analysis does not support optional dependencies, please double check those before making changes. If you do not want hinting of this kind ever please add bot: inspection: false to your conda-forge.yml. If you encounter issues with this feature please ping the bot team conda-forge/bot.

Analysis of the source code shows a discrepancy between the library's imports and the package's stated requirements in the meta.yaml.

Packages found by inspection but not in the meta.yaml:

• matplotlib
• sphinx-gallery

Packages found in the meta.yaml but not found by inspection:

• netcdf4

[conda-forge-linter]

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipe) and found it was in an excellent condition.

[weiji14]

Hmm, I don't get the error being reported. Will need to investigate and maybe re-run the CI later.

```bash Extracting download source tree in: /home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/work export PREFIX=/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place export BUILD_PREFIX=/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_build_env export SRC_DIR=/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/work Using pip 21.3.1 from $PREFIX/lib/python3.9/site-packages/pip (python 3.9) Non-user install because user site-packages disabled Ignoring indexes: https://pypi.org/simple Created temporary directory: /tmp/pip-ephem-wheel-cache-10haojji Created temporary directory: /tmp/pip-req-tracker-23brcxo6 Initialized build tracking at /tmp/pip-req-tracker-23brcxo6 Created build tracker: /tmp/pip-req-tracker-23brcxo6 Entered build tracker: /tmp/pip-req-tracker-23brcxo6 Created temporary directory: /tmp/pip-install-nanwqysr Processing $SRC_DIR Added file://$SRC_DIR to build tracker '/tmp/pip-req-tracker-23brcxo6' Created temporary directory: /tmp/pip-modern-metadata-sz9cblu0 Preparing metadata (pyproject.toml): started Running command /home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/bin/python /home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmplxybc_su Traceback (most recent call last): File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in main() File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel return hook(metadata_directory, config_settings) File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/setuptools/build_meta.py", line 166, in prepare_metadata_for_build_wheel self.run_setup() File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/setuptools/build_meta.py", line 258, in run_setup super(_BuildMetaLegacyBackend, File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/setuptools/build_meta.py", line 150, in run_setup exec(compile(code, __file__, 'exec'), locals()) File "setup.py", line 44, in setup( File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/setuptools/__init__.py", line 159, in setup return distutils.core.setup(**attrs) File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/distutils/core.py", line 108, in setup _setup_distribution = dist = klass(attrs) File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/setuptools/dist.py", line 453, in __init__ _Distribution.__init__( File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/distutils/dist.py", line 292, in __init__ self.finalize_options() File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/setuptools/dist.py", line 830, in finalize_options for ep in sorted(loaded, key=by_order): File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/setuptools/dist.py", line 829, in loaded = map(lambda e: e.load(), filtered) File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/pkg_resources/__init__.py", line 2449, in load self.require(*args, **kwargs) File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/pkg_resources/__init__.py", line 2472, in require items = working_set.resolve(reqs, env, installer, extras=self.extras) File "/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/pkg_resources/__init__.py", line 777, in resolve raise VersionConflict(dist, req).with_context(dependent_req) pkg_resources.ContextualVersionConflict: (pyparsing 3.0.3 (/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages), Requirement.parse('pyparsing<3,>=2.0.2'), {'packaging'}) Preparing metadata (pyproject.toml): finished with status 'error' WARNING: Discarding file:///home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/work. Command errored out with exit status 1: /home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/bin/python /home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmplxybc_su Check the logs for full command output. ERROR: Command errored out with exit status 1: /home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/bin/python /home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmplxybc_su Check the logs for full command output. Exception information: Traceback (most recent call last): File "$PREFIX/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 164, in exc_logging_wrapper status = run_func(*args) File "$PREFIX/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper return func(self, options, args) File "$PREFIX/lib/python3.9/site-packages/pip/_internal/commands/install.py", line 338, in run requirement_set = resolver.resolve( File "$PREFIX/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 73, in resolve collected = self.factory.collect_root_requirements(root_reqs) File "$PREFIX/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 468, in collect_root_requirements req = self._make_requirement_from_install_req( File "$PREFIX/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 445, in _make_requirement_from_install_req raise self._build_failures[ireq.link] File "$PREFIX/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/factory.py", line 201, in _make_candidate_from_link self._link_candidate_cache[link] = LinkCandidate( File "$PREFIX/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 281, in __init__ super().__init__( File "$PREFIX/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ self.dist = self._prepare() File "$PREFIX/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare dist = self._prepare_distribution() File "$PREFIX/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/candidates.py", line 292, in _prepare_distribution return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) File "$PREFIX/lib/python3.9/site-packages/pip/_internal/operations/prepare.py", line 482, in prepare_linked_requirement return self._prepare_linked_requirement(req, parallel_builds) File "$PREFIX/lib/python3.9/site-packages/pip/_internal/operations/prepare.py", line 546, in _prepare_linked_requirement dist = _get_prepared_distribution( File "$PREFIX/lib/python3.9/site-packages/pip/_internal/operations/prepare.py", line 58, in _get_prepared_distribution abstract_dist.prepare_distribution_metadata(finder, build_isolation) File "$PREFIX/lib/python3.9/site-packages/pip/_internal/distributions/sdist.py", line 49, in prepare_distribution_metadata self.req.prepare_metadata() File "$PREFIX/lib/python3.9/site-packages/pip/_internal/req/req_install.py", line 556, in prepare_metadata self.metadata_directory = generate_metadata( File "$PREFIX/lib/python3.9/site-packages/pip/_internal/operations/build/metadata.py", line 28, in generate_metadata distinfo_dir = backend.prepare_metadata_for_build_wheel(metadata_dir) File "$PREFIX/lib/python3.9/site-packages/pip/_vendor/pep517/wrappers.py", line 188, in prepare_metadata_for_build_wheel return self._call_hook('prepare_metadata_for_build_wheel', { File "$PREFIX/lib/python3.9/site-packages/pip/_vendor/pep517/wrappers.py", line 322, in _call_hook self._subprocess_runner( File "$PREFIX/lib/python3.9/site-packages/pip/_internal/utils/subprocess.py", line 282, in runner call_subprocess( File "$PREFIX/lib/python3.9/site-packages/pip/_internal/utils/subprocess.py", line 254, in call_subprocess raise InstallationSubprocessError(proc.returncode, command_desc) pip._internal.exceptions.InstallationSubprocessError: Command errored out with exit status 1: $PREFIX/bin/python $PREFIX/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmplxybc_su Check the logs for full command output. Removed file://$SRC_DIR from build tracker '/tmp/pip-req-tracker-23brcxo6' Removed build tracker: '/tmp/pip-req-tracker-23brcxo6' Traceback (most recent call last): File "/opt/conda/bin/conda-mambabuild", line 10, in sys.exit(main()) File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 164, in main call_conda_build(action, config) File "/opt/conda/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 137, in call_conda_build result = api.build( File "/opt/conda/lib/python3.8/site-packages/conda_build/api.py", line 186, in build return build_tree( File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 3068, in build_tree packages_from_this = build(metadata, stats, File "/opt/conda/lib/python3.8/site-packages/conda_build/build.py", line 2191, in build utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env, File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 412, in check_call_env return _func_defaulting_env_to_os_environ('call', *popenargs, **kwargs) File "/opt/conda/lib/python3.8/site-packages/conda_build/utils.py", line 392, in _func_defaulting_env_to_os_environ raise subprocess.CalledProcessError(proc.returncode, _args) subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/home/conda/feedstock_root/build_artifacts/pygmt_1635540884320/work/conda_build.sh']' returned non-zero exit status 1. ##[error]Bash exited with code '1'. ```

[weiji14]

Oh shoot, forgot to pin the minimum numpy version... Let me open a patch.