pymc v5.15.1

[regro-cf-autotick-bot]

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• [ ] Dependencies have been updated if changed: see upstream
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Pending Dependency Version Updates

Here is a list of all the pending dependency version updates for this repo. Please double check all dependencies before merging.

Name	Upstream Version	Current Version
pymc	5.15.1

Dependency Analysis

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Analysis by source code inspection shows a discrepancy between it and the the package's stated requirements in the meta.yaml.

Packages found by source code inspection but not in the meta.yaml:

• pytest
• xarray
• threadpoolctl
• typing_extensions
• jax

Packages found in the meta.yaml but not found by source code inspection:

• pytensor
• typing-extensions

_{This PR was created by the regro-cf-autotick-bot. The regro-cf-autotick-bot is a service to automatically track the dependency graph, migrate packages, and propose package version updates for conda-forge. Feel free to drop us a line if there are any issues! This PR was generated by https://github.com/regro/cf-scripts/actions/runs/9308502087 - please use this URL for debugging.}

[conda-forge-webservices[bot]]

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipe) and found it was in an excellent condition.

[twiecki]

import: 'pymc'
WARNING (pytensor.configdefaults): g++ not detected!  PyTensor will be unable to compile C-implementations and will default to Python. Performance may be severely degraded. To remove this warning, set PyTensor flags cxx to an empty string.
WARNING (pytensor.tensor.blas): Using NumPy C-API based implementation for BLAS functions.
Traceback (most recent call last):
  File "/home/conda/feedstock_root/build_artifacts/pymc-suite_1717125891687/test_tmp/run_test.py", line 2, in <module>
    import pymc
  File "/home/conda/feedstock_root/build_artifacts/pymc-suite_1717125891687/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.12/site-packages/pymc/__init__.py", line 48, in <module>
    from pymc import _version, gp, ode, sampling
  File "/home/conda/feedstock_root/build_artifacts/pymc-suite_1717125891687/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.12/site-packages/pymc/sampling/__init__.py", line 17, in <module>
    from pymc.sampling.mcmc import *
  File "/home/conda/feedstock_root/build_artifacts/pymc-suite_1717125891687/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.12/site-packages/pymc/sampling/mcmc.py", line 41, in <module>
    from threadpoolctl import threadpool_limits
ModuleNotFoundError: No module named 'threadpoolctl'

[ricardoV94]

import: 'pymc'
WARNING (pytensor.configdefaults): g++ not detected!  PyTensor will be unable to compile C-implementations and will default to Python. Performance may be severely degraded. To remove this warning, set PyTensor flags cxx to an empty string.
WARNING (pytensor.tensor.blas): Using NumPy C-API based implementation for BLAS functions.
Traceback (most recent call last):
  File "/home/conda/feedstock_root/build_artifacts/pymc-suite_1717125891687/test_tmp/run_test.py", line 2, in <module>
    import pymc
  File "/home/conda/feedstock_root/build_artifacts/pymc-suite_1717125891687/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.12/site-packages/pymc/__init__.py", line 48, in <module>
    from pymc import _version, gp, ode, sampling
  File "/home/conda/feedstock_root/build_artifacts/pymc-suite_1717125891687/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.12/site-packages/pymc/sampling/__init__.py", line 17, in <module>
    from pymc.sampling.mcmc import *
  File "/home/conda/feedstock_root/build_artifacts/pymc-suite_1717125891687/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.12/site-packages/pymc/sampling/mcmc.py", line 41, in <module>
    from threadpoolctl import threadpool_limits
ModuleNotFoundError: No module named 'threadpoolctl'

New dependency, I guess the recipe needs to be tweaked?

[twiecki]

pymc 5.15.1 has requirement pytensor<2.23,>=2.22.1, but you have pytensor 2.20.0

[ricardoV94]

Yes also that

[ricardoV94]

Thanks

[maresb]

Yikes, the version pins are missing from threadpoolctl.

[twiecki]

Do we need them? We also lack them for cloudpickle.

[maresb]

We also lack them for cloudpickle.

This should be okay since there aren't version pins upstream.

Do we need them?

Maybe, maybe not. I like to be very strict about matching the PyPI dependencies. Otherwise we run the risk of very confusing dependency conflicts, for example here where a single bad ArviZ build is causing the PyMC3 build to fail.

I might add a repodata patch for this to be safe.

[twiecki]

OK, lets add it for next time.