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conda-forge / r-base-feedstock

A conda-smithy repository for r-base.
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No PNG support in R 3.4.1-hff14c37_5 #50

Closed matrs closed 6 years ago

matrs commented 6 years ago

Issue: I just created a new environment with conda create -n bioc r-base=3.4.1 rstudio r-tidyverse bioconductor-deseq2 bioconductor-edger bioconductor-biostrings bioconductor-bsgenome And there isn't PNG support

> capabilities()
       jpeg         png        tiff       tcltk         X11        aqua 
       TRUE       FALSE       FALSE        TRUE        TRUE       FALSE 
   http/ftp     sockets      libxml        fifo      cledit       iconv 
       TRUE        TRUE        TRUE        TRUE        TRUE        TRUE 
        NLS     profmem       cairo         ICU long.double     libcurl 
       TRUE        TRUE       FALSE        TRUE        TRUE        TRUE

I tested an environment with R=3.4.3-4 and png was supported, but rstudio needs r-base 3.4.1-hff14c37_5 which apparently has this problem.

r-base: 3.4.1-4 conda-forge --> 3.4.1-hff14c37_5 conda-forge


Environment (conda list):

``` $ conda list # packages in environment at /media/mibu/Storage_SSD/Miniconda3/envs/bioconductor: # # Name Version Build Channel _r-mutex 1.0.0 mro_2 backcall 0.1.0 py_0 conda-forge binutils_impl_linux-64 2.28.1 had2808c_3 binutils_linux-64 7.2.0 had2808c_27 bioconductor-annotate 1.56.0 r3.4.1_0 bioconda bioconductor-annotationdbi 1.40.0 r3.4.1_0 bioconda bioconductor-biobase 2.38.0 r3.4.1_0 bioconda bioconductor-biocgenerics 0.24.0 r3.4.1_0 bioconda bioconductor-biocparallel 1.12.0 r3.4.1_0 bioconda bioconductor-biostrings 2.46.0 r3.4.1_0 bioconda bioconductor-bsgenome 1.46.0 r3.4.1_0 bioconda bioconductor-delayedarray 0.4.1 r3.4.1_0 bioconda bioconductor-deseq2 1.18.1 r3.4.1_1 bioconda bioconductor-edger 3.20.7 r3.4.1_0 bioconda bioconductor-genefilter 1.60.0 r3.4.1_0 bioconda bioconductor-geneplotter 1.56.0 r3.4.1_0 bioconda bioconductor-genomeinfodb 1.14.0 r3.4.1_0 bioconda bioconductor-genomeinfodbdata 1.0.0 r3.4.1_1 bioconda bioconductor-genomicalignments 1.14.1 r3.4.1_0 bioconda bioconductor-genomicranges 1.30.3 r3.4.1_0 bioconda bioconductor-iranges 2.12.0 r3.4.1_0 bioconda bioconductor-limma 3.34.9 r3.4.1_0 bioconda bioconductor-rsamtools 1.30.0 r3.4.1_0 bioconda bioconductor-rtracklayer 1.38.3 r3.4.1_0 bioconda bioconductor-s4vectors 0.16.0 r3.4.1_0 bioconda bioconductor-summarizedexperiment 1.8.0 r3.4.1_0 bioconda bioconductor-tximport 1.6.0 r3.4.1_0 bioconda bioconductor-xvector 0.18.0 r3.4.1_0 bioconda bioconductor-zlibbioc 1.24.0 r3.4.1_0 bioconda bleach 1.4.2 py36_0 bioconda bzip2 1.0.6 1 conda-forge ca-certificates 2018.4.16 0 conda-forge cairo 1.14.12 h77bcde2_0 certifi 2018.4.16 py36_0 conda-forge curl 7.60.0 0 conda-forge cyrus-sasl 2.1.26 1 conda-forge dbus 1.13.0 h3a4f0e9_0 conda-forge decorator 4.3.0 py_0 conda-forge entrypoints 0.2.3 py36_1 conda-forge expat 2.2.5 hfc679d8_1 conda-forge font-ttf-dejavu-sans-mono 2.37 h6964260_0 font-ttf-inconsolata 2.001 hcb22688_0 font-ttf-source-code-pro 2.030 h7457263_0 font-ttf-ubuntu 0.83 h8b1ccd4_0 fontconfig 2.12.6 0 conda-forge fonts-anaconda 1 h8fa9717_0 freetype 2.8.1 0 conda-forge fribidi 1.0.4 h14c3975_0 gcc_impl_linux-64 7.2.0 habb00fd_3 gcc_linux-64 7.2.0 h550dcbe_27 gfortran_impl_linux-64 7.2.0 hdf63c60_3 gfortran_linux-64 7.2.0 h550dcbe_27 glib 2.53.6 h5d9569c_2 gmp 6.1.2 hfc679d8_0 conda-forge graphite2 1.3.11 hfc679d8_0 conda-forge gsl 2.1 2 conda-forge gst-plugins-base 1.8.0 0 conda-forge gstreamer 1.8.0 1 conda-forge gxx_impl_linux-64 7.2.0 hdf63c60_3 gxx_linux-64 7.2.0 h550dcbe_27 harfbuzz 1.7.6 hc5b324e_0 html5lib 1.0.1 py_0 conda-forge icu 58.2 hfc679d8_0 conda-forge ipykernel 4.8.2 py36_0 conda-forge ipython 6.4.0 py36_0 conda-forge ipython_genutils 0.2.0 py36_0 conda-forge jedi 0.12.0 py36_0 conda-forge jinja2 2.10 py36_0 conda-forge jpeg 9c h470a237_0 conda-forge jsonschema 2.6.0 py36_1 conda-forge jupyter_client 5.2.3 py36_0 conda-forge jupyter_core 4.4.0 py_0 conda-forge krb5 1.14.6 0 conda-forge libedit 3.1.20170329 haf1bffa_0 conda-forge libffi 3.2.1 3 conda-forge libgcc 7.2.0 h69d50b8_2 libgcc-ng 7.2.0 hdf63c60_3 libgfortran-ng 7.2.0 hdf63c60_3 libiconv 1.15 h470a237_1 conda-forge libntlm 1.4 h470a237_1 conda-forge libpng 1.6.34 ha92aebf_1 conda-forge libsodium 1.0.16 0 conda-forge libssh2 1.8.0 h5b517e9_2 conda-forge libstdcxx-ng 7.2.0 hdf63c60_3 libtiff 4.0.9 he6b73bb_1 conda-forge libuuid 1.0.3 1 conda-forge libxcb 1.13 h470a237_0 conda-forge libxml2 2.9.8 h422b904_1 conda-forge markupsafe 1.0 py36_0 conda-forge mistune 0.8.3 py36_1 conda-forge mro-base 3.4.3 h1c2f66e_0 nbconvert 5.3.1 py_1 conda-forge nbformat 4.4.0 py36_0 conda-forge ncurses 6.1 0 conda-forge notebook 5.5.0 py36_0 conda-forge openssl 1.0.2o 0 conda-forge pandoc 2.2.1 0 conda-forge pandocfilters 1.4.2 py36_0 conda-forge pango 1.42.0 h377f3fa_0 parso 0.3.0 py_0 conda-forge pcre 8.39 0 conda-forge pexpect 4.6.0 py36_0 conda-forge pickleshare 0.7.4 py36_0 conda-forge pip 9.0.3 py36_0 conda-forge pixman 0.34.0 2 conda-forge prompt_toolkit 1.0.15 py36_0 conda-forge ptyprocess 0.6.0 py36_0 conda-forge pygments 2.2.0 py36_0 conda-forge python 3.6.4 hc3d631a_1 python-dateutil 2.7.3 py_0 conda-forge pyzmq 17.0.0 py36_4 conda-forge qt 5.6.2 7 conda-forge r-abind 1.4_5 r3.4.1_0 conda-forge r-acepack 1.4.1 r3.4.1_0 conda-forge r-assertthat 0.2.0 r3.4.1_0 conda-forge r-backports 1.1.2 r3.4.1_0 conda-forge r-base 3.4.1 hff14c37_5 conda-forge r-base64enc 0.1_3 r3.4.1_0 conda-forge r-bh 1.66.0_1 r3.4.1_0 conda-forge r-bindr 0.1.1 r3.4.1_0 conda-forge r-bindrcpp 0.2 r3.4.1_0 conda-forge r-bit 1.1_12 r3.4.1_0 conda-forge r-bit64 0.9_5 r3.4.1_0 conda-forge r-bitops 1.0_6 r3.4.1_0 conda-forge r-blob 1.1.1 r3.4.1_0 conda-forge r-boot 1.3_20 r3.4.1_0 conda-forge r-broom 0.4.4 r3.4.1_0 conda-forge r-caret 6.0_79 r3.4.1_0 conda-forge r-catools 1.17.1 r3.4.1_0 conda-forge r-cellranger 1.1.0 r3.4.1_0 conda-forge r-checkmate 1.8.5 r3.4.1_0 conda-forge r-class 7.3_14 r3.4.1_0 conda-forge r-cli 1.0.0 r3.4.1_0 conda-forge r-cluster 2.0.6 r3.4.1_0 conda-forge r-codetools 0.2_15 r3.4.1_0 conda-forge r-colorspace 1.3_2 r3.4.1_0 conda-forge r-config 0.2 r3.4.1_0 conda-forge r-crayon 1.3.4 r3.4.1_0 conda-forge r-curl 3.2 r3.4.1_0 conda-forge r-cvst 0.2_1 r3.4.1_0 conda-forge r-data.table 1.10.4 r3.4.1_0 bioconda r-dbi 1.0.0 r341_0 conda-forge r-dbplyr 1.2.1 r341_1 conda-forge r-ddalpha 1.3.4 r341_0 conda-forge r-deoptimr 1.0_8 r3.4.1_0 bioconda r-dichromat 2.0_0 r3.4.1_0 conda-forge r-digest 0.6.15 r3.4.1_0 conda-forge r-dimred 0.1.0 r3.4.1_0 conda-forge r-dplyr 0.7.4 r3.4.1_0 conda-forge r-drr 0.0.3 r3.4.1_0 conda-forge r-essentials 3.4.1 r3.4.1_0 conda-forge r-evaluate 0.10.1 r3.4.1_0 conda-forge r-forcats 0.3.0 r3.4.1_0 conda-forge r-foreach 1.4.4 r3.4.1_0 conda-forge r-foreign 0.8_67 r3.4.1_0 conda-forge r-formatr 1.5 r3.4.1_0 conda-forge r-formula 1.2_1 r3.4.1_0 conda-forge r-futile.logger 1.4.3 r3.4.1_0 conda-forge r-futile.options 1.0.0 r3.4.1_0 conda-forge r-gdata 2.18.0 r3.4.1_0 conda-forge r-geometry 0.3_6 r3.4.1_0 conda-forge r-getopt 1.20.2 r3.4.1_0 conda-forge r-ggplot2 2.2.1 r3.4.1_0 conda-forge r-gistr 0.4.2 r341_0 conda-forge r-glmnet 2.0_5 r3.4.1_0 conda-forge r-glue 1.2.0 r3.4.1_0 conda-forge r-gower 0.1.2 r3.4.1_0 conda-forge r-gplots 3.0.1 r3.4.1_0 conda-forge r-gridextra 2.3 r3.4.1_0 conda-forge r-gtable 0.2.0 r3.4.1_0 conda-forge r-gtools 3.8.1 r341_0 conda-forge r-haven 1.1.2 r341_0 conda-forge r-hexbin 1.27.2 r3.4.1_0 conda-forge r-highr 0.7 r341_0 conda-forge r-hmisc 4.0_3 r3.4.1_0 conda-forge r-hms 0.3 r3.4.1_0 conda-forge r-htmltable 1.9 r3.4.1_0 conda-forge r-htmltools 0.3.6 r3.4.1_0 conda-forge r-htmlwidgets 1.0 r3.4.1_0 conda-forge r-httpuv 1.3.6.2 r3.4.1_0 conda-forge r-httr 1.3.1 r3.4.1_0 conda-forge r-ipred 0.9_6 r3.4.1_0 conda-forge r-irdisplay 0.4.4 r3.4.1_0 conda-forge r-irkernel 0.8.11 r3.4.1_0 conda-forge r-iterators 1.0.9 r3.4.1_0 conda-forge r-jsonlite 1.5 r3.4.1_0 conda-forge r-kernlab 0.9_25 r3.4.1_0 conda-forge r-kernsmooth 2.23_15 r3.4.1_0 conda-forge r-knitr 1.20 r3.4.1_0 conda-forge r-labeling 0.3 r3.4.1_0 conda-forge r-lambda.r 1.2 r3.4.1_0 conda-forge r-lattice 0.20_34 r3.4.1_0 conda-forge r-latticeextra 0.6_28 r3.4.1_0 conda-forge r-lava 1.6.1 r3.4.1_0 conda-forge r-lazyeval 0.2.1 r3.4.1_0 conda-forge r-locfit 1.5_9.1 r3.4.1_0 conda-forge r-lubridate 1.7.4 r3.4.1_0 conda-forge r-magic 1.5_6 r3.4.1_0 conda-forge r-magrittr 1.5 r3.4.1_0 conda-forge r-maps 3.3.0 r3.4.1_0 conda-forge r-markdown 0.8 r3.4.1_1 conda-forge r-mass 7.3_48 r3.4.1_0 conda-forge r-matrix 1.2_14 r3.4.1_0 conda-forge r-matrixstats 0.53.1 r341_0 conda-forge r-memoise 1.1.0 r3.4.1_0 conda-forge r-mgcv 1.8_24 r341_0 conda-forge r-mime 0.5 r3.4.1_0 conda-forge r-miniui 0.1.1 r3.4.1_0 conda-forge r-mnormt 1.5_5 r3.4.1_0 conda-forge r-modelmetrics 1.1.0 r3.4.1_0 conda-forge r-modelr 0.1.2 r341_0 conda-forge r-mongolite 1.4 mro343h086d26f_0 r-munsell 0.5.0 r341_0 conda-forge r-nlme 3.1_131 r3.4.1_0 conda-forge r-nnet 7.3_12 r3.4.1_0 conda-forge r-numderiv 2016.8_1 r3.4.1_0 conda-forge r-odbc 1.1.3 mro343h599a50d_0 r-openssl 1.0.1 r3.4.1_0 conda-forge r-packrat 0.4.9 r3.4.1_0 conda-forge r-pbdzmq 0.3_2 r3.4.1_0 conda-forge r-pillar 1.2.2 r341h6115d3f_1 conda-forge r-pkgconfig 2.0.1 r3.4.1_0 conda-forge r-pki 0.1_3 r3.4.1_0 conda-forge r-plogr 0.1_1 r3.4.1_0 conda-forge r-pls 2.6_0 r3.4.1_0 conda-forge r-plyr 1.8.4 r3.4.1_0 conda-forge r-prettyunits 1.0.2 r3.4.1_0 conda-forge r-prodlim 2018.04.18 r3.4.1_0 conda-forge r-profvis 0.3.4 mro343h086d26f_0 r-pryr 0.1.4 r3.4.1_0 conda-forge r-psych 1.5.8 r3.4.1_0 bioconda r-purrr 0.2.4 r3.4.1_0 conda-forge r-quantmod 0.4_8 r3.4.1_0 conda-forge r-r6 2.2.2 r3.4.1_0 conda-forge r-randomforest 4.6_12 r3.4.1_0 conda-forge r-rappdirs 0.3.1 r3.4.1_0 conda-forge r-rbokeh 0.5.0 r3.4.1_0 conda-forge r-rcolorbrewer 1.1_2 r3.4.1_0 conda-forge r-rcpp 0.12.15 r3.4.1_0 conda-forge r-rcpparmadillo 0.8.500.0 r3.4.1_0 conda-forge r-rcpproll 0.2.2 r3.4.1_0 conda-forge r-rcurl 1.95_4.8 r3.4.1_0 conda-forge r-readr 1.1.1 r3.4.1_0 conda-forge r-readxl 1.1.0 r341_0 conda-forge r-recipes 0.1.3 r341_0 conda-forge r-recommended 3.4.1 r3.4.1_0 conda-forge r-rematch 1.0.1 r3.4.1_0 conda-forge r-repr 0.15 r341_0 conda-forge r-reshape2 1.4.3 r3.4.1_0 conda-forge r-rjava 0.9_9 mro343h086d26f_0 r-rjdbc 0.2_5 mro343h889e2dd_0 r-rjson 0.2.15 r3.4.1_0 conda-forge r-rjsonio 1.3_0 r3.4.1_0 conda-forge r-rlang 0.2.1 r341_0 conda-forge r-rmarkdown 1.9 r341_0 conda-forge r-robustbase 0.92_7 r3.4.1_0 conda-forge r-rpart 4.1_13 r3.4.1_0 conda-forge r-rprojroot 1.3_2 r3.4.1_0 conda-forge r-rsconnect 0.8.5 mro343h889e2dd_0 r-rsqlite 2.0 r3.4.1_0 conda-forge r-rstudioapi 0.7 r3.4.1_0 conda-forge r-rvest 0.3.2 r3.4.1_0 conda-forge r-scales 0.5.0 r3.4.1_0 conda-forge r-selectr 0.3_1 r3.4.1_0 conda-forge r-sfsmisc 1.1_1 r3.4.1_0 conda-forge r-shiny 1.0.5 r3.4.1_0 conda-forge r-snow 0.4_2 r3.4.1_0 conda-forge r-sourcetools 0.1.6 r3.4.1_0 conda-forge r-sparklyr 0.8.2 r3.4.1_0 conda-forge r-spatial 7.3_11 r3.4.1_0 conda-forge r-squarem 2017.10_1 r3.4.1_0 conda-forge r-stringi 1.1.7 r3.4.1_1 conda-forge r-stringr 1.3.0 r3.4.1_0 conda-forge r-survival 2.40_1 r3.4.1_0 conda-forge r-tibble 1.4.2 r3.4.1_0 conda-forge r-tidyr 0.8.1 r341_0 conda-forge r-tidyselect 0.2.4 r3.4.1_0 conda-forge r-tidyverse 1.1.1 r3.4.1_0 conda-forge r-timedate 3012.100 r3.4.1_0 conda-forge r-ttr 0.23_1 r3.4.1_0 conda-forge r-utf8 1.1.3 r3.4.1_0 conda-forge r-uuid 0.1_2 r3.4.1_0 conda-forge r-viridis 0.5.1 r3.4.1_0 conda-forge r-viridislite 0.3.0 r3.4.1_0 conda-forge r-withr 2.1.1 r3.4.1_0 conda-forge r-xml 3.98_1.6 r3.4.1_0 conda-forge r-xml2 1.2.0 r341_0 conda-forge r-xtable 1.8_2 r3.4.1_0 conda-forge r-xts 0.10_1 r3.4.1_0 conda-forge r-yaml 2.1.18 r3.4.1_0 conda-forge r-zoo 1.8_1 r3.4.1_0 conda-forge readline 7.0 ha6073c6_4 rstudio 1.1.383 h2c9cdda_2 send2trash 1.5.0 py_0 conda-forge setuptools 39.2.0 py36_0 conda-forge simplegeneric 0.8.1 py36_0 conda-forge six 1.11.0 py36_1 conda-forge sqlite 3.20.1 0 conda-forge terminado 0.8.1 py36_0 conda-forge testpath 0.3.1 py36_0 conda-forge tk 8.6.7 0 conda-forge tornado 5.0.2 py36_0 conda-forge traitlets 4.3.2 py36_0 conda-forge unixodbc 2.3.5 h09ba92c_1 conda-forge wcwidth 0.1.7 py36_0 conda-forge webencodings 0.5 py36_0 conda-forge wget 1.19.5 h1ad7b7a_0 wheel 0.31.0 py36_0 conda-forge xorg-kbproto 1.0.7 h470a237_2 conda-forge xorg-libice 1.0.9 2 conda-forge xorg-libsm 1.2.2 2 conda-forge xorg-libx11 1.6.5 0 conda-forge xorg-libxau 1.0.8 h470a237_4 conda-forge xorg-libxdmcp 1.1.2 h470a237_4 conda-forge xorg-libxext 1.3.3 2 conda-forge xorg-libxrender 0.9.10 0 conda-forge xorg-renderproto 0.11.1 h470a237_2 conda-forge xorg-xextproto 7.3.0 h470a237_2 conda-forge xorg-xproto 7.0.31 h470a237_7 conda-forge xz 5.2.3 0 conda-forge zeromq 4.2.5 hfc679d8_3 conda-forge zlib 1.2.11 h470a237_3 conda-forge ```


Details about conda and system ( conda info ):

``` $ conda info active environment : bioc active env location : /media/mibu/Storage_SSD/Miniconda3/envs/bioc shell level : 1 user config file : /home/mibu/.condarc populated config files : /home/mibu/.condarc conda version : 4.5.5 conda-build version : not installed python version : 3.6.5.final.0 base environment : /media/mibu/Storage_SSD/Miniconda3 (writable) channel URLs : https://conda.anaconda.org/bioconda/linux-64 https://conda.anaconda.org/bioconda/noarch https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/free/linux-64 https://repo.anaconda.com/pkgs/free/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch https://repo.anaconda.com/pkgs/pro/linux-64 https://repo.anaconda.com/pkgs/pro/noarch package cache : /media/mibu/Storage_SSD/Miniconda3/pkgs /home/mibu/.conda/pkgs envs directories : /media/mibu/Storage_SSD/Miniconda3/envs /home/mibu/.conda/envs platform : linux-64 user-agent : conda/4.5.5 requests/2.18.4 CPython/3.6.5 Linux/4.14.52-1-MANJARO manjaro/17.1.11 glibc/2.27 UID:GID : 1000:1000 netrc file : None offline mode : False ```
garrettjstevens commented 6 years ago

There have been a couple builds since this, and I think it's getting worse? Meaning that now JPEG appears to not be supported as well as PNG. Using r-base h4fe35fd_7:

> capabilities()
       jpeg         png        tiff       tcltk         X11        aqua
      FALSE       FALSE       FALSE        TRUE       FALSE       FALSE
   http/ftp     sockets      libxml        fifo      cledit       iconv
       TRUE        TRUE        TRUE        TRUE       FALSE        TRUE
        NLS     profmem       cairo         ICU long.double     libcurl
       TRUE        TRUE       FALSE        TRUE        TRUE        TRUE

Environment (conda list):

Details

``` # packages in environment at rtest: # # Name Version Build Channel bzip2 1.0.6 h470a237_2 conda-forge ca-certificates 2018.4.16 0 conda-forge cairo 1.14.12 he56eebe_3 conda-forge curl 7.60.0 0 conda-forge fontconfig 2.13.0 h074f895_3 conda-forge freetype 2.8.1 0 conda-forge gettext 0.19.8.1 0 conda-forge glib 2.55.0 0 conda-forge graphite2 1.3.11 hfc679d8_0 conda-forge gsl 2.2.1 h0c605f7_3 harfbuzz 1.8.4 h2bb21d5_0 conda-forge icu 58.2 hfc679d8_0 conda-forge jpeg 9c h470a237_0 conda-forge krb5 1.14.6 0 conda-forge libffi 3.2.1 3 conda-forge libgcc-ng 7.2.0 hdf63c60_3 libgfortran 3.0.0 1 libiconv 1.15 h470a237_1 conda-forge libpng 1.6.34 ha92aebf_1 conda-forge libssh2 1.8.0 h5b517e9_2 conda-forge libstdcxx-ng 7.2.0 hdf63c60_3 libtiff 4.0.9 he6b73bb_1 conda-forge libuuid 1.0.3 1 conda-forge libxcb 1.13 h470a237_2 conda-forge libxml2 2.9.8 h422b904_2 conda-forge ncurses 6.1 0 conda-forge openssl 1.0.2o 0 conda-forge pango 1.40.14 h9105a7a_2 conda-forge pcre 8.41 1 conda-forge pixman 0.34.0 2 conda-forge pthread-stubs 0.4 h470a237_1 conda-forge r-base 3.4.1 h4fe35fd_7 conda-forge readline 7.0 haf1bffa_1 conda-forge tk 8.6.8 0 conda-forge xorg-kbproto 1.0.7 h470a237_2 conda-forge xorg-libice 1.0.9 h470a237_4 conda-forge xorg-libsm 1.2.2 h470a237_4 conda-forge xorg-libx11 1.6.5 h470a237_2 conda-forge xorg-libxau 1.0.8 h470a237_6 conda-forge xorg-libxdmcp 1.1.2 h470a237_7 conda-forge xorg-libxext 1.3.3 h470a237_4 conda-forge xorg-libxrender 0.9.10 h470a237_2 conda-forge xorg-renderproto 0.11.1 h470a237_2 conda-forge xorg-xextproto 7.3.0 h470a237_2 conda-forge xorg-xproto 7.0.31 h470a237_7 conda-forge xz 5.2.3 0 conda-forge zlib 1.2.11 h470a237_3 conda-forge ```

SylvainCorlay commented 6 years ago

Seeing the same thing with png support missing.

bgruening commented 6 years ago

@SylvainCorlay @garrett-stevens can you please try the latest (build 8) of r-base. I get:

R version 3.4.1 (2017-06-30) -- "Single Candle"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R ist freie Software und kommt OHNE JEGLICHE GARANTIE.
Sie sind eingeladen, es unter bestimmten Bedingungen weiter zu verbreiten.
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> capabilities()
       jpeg         png        tiff       tcltk         X11        aqua 
       TRUE        TRUE        TRUE        TRUE        TRUE       FALSE 
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       TRUE        TRUE        TRUE        TRUE       FALSE        TRUE 
        NLS     profmem       cairo         ICU long.double     libcurl 
       TRUE        TRUE        TRUE        TRUE        TRUE        TRUE
SylvainCorlay commented 6 years ago

@bgruening sorry for not commenting more on this earlier. The _8 build appears to work, but the conda SAT solver seems to result in the _6 build getting installed instead!

It appears to be a conda bug more than a bug in the recipe. Pinning to that build works fine.

bgruening commented 6 years ago

@ocefpaf @isuruf should be mark _6 as broken?

ocefpaf commented 6 years ago

@ocefpaf @isuruf should be mark _6 as broken?

I did that. Let me know if there are any other that should be marked as well.

garrettjstevens commented 6 years ago

@ocefpaf, I think _7 needs to get marked broken as well (see my comment above).

ocefpaf commented 6 years ago

@ocefpaf, I think _7 needs to get marked broken as well (see my comment above).

Done.

SylvainCorlay commented 6 years ago

Currently running the jupyterlab demo binder build that was getting the wrong build, without any pinning.

garrettjstevens commented 6 years ago

@ocefpaf, looks like _5 needs to be marked broken as well (that was the OP's build, and I've confirmed locally).

ocefpaf commented 6 years ago

@ocefpaf, looks like _5 needs to be marked broken as well (that was the OP's build, and I've confirmed locally).

Done. I'm reluctant to remove all but the latest b/c someone of the old builds may be a corner case for a health build depending on the user pinning. So we may need to iterate a few more times until we can get conda to solve for "the right one."