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conda-forge / r-gdalcubes-feedstock

A conda-smithy repository for r-gdalcubes.
BSD 3-Clause "New" or "Revised" License
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Issues with coordinate transformations - Proj dependency problem ? #64

Open glaroc opened 1 month ago

glaroc commented 1 month ago

Solution to issue cannot be found in the documentation.

Issue

See https://github.com/appelmar/gdalcubes/issues/99 . We only have this problem with r-gdalcubes in Conda. Any use of gdalcubes that requires a coordinate transformation crashes with an error.

Installed packages

```shell # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge _r-mutex 1.0.1 anacondar_1 conda-forge _sysroot_linux-64_curr_repodata_hack 3 h69a702a_16 conda-forge alsa-lib 1.2.12 h4ab18f5_0 conda-forge anyio 4.4.0 pyhd8ed1ab_0 conda-forge archspec 0.2.3 pyhd8ed1ab_0 conda-forge argon2-cffi 23.1.0 pyhd8ed1ab_0 conda-forge argon2-cffi-bindings 21.2.0 py312h98912ed_4 conda-forge arrow 1.3.0 pyhd8ed1ab_0 conda-forge asttokens 2.4.1 pyhd8ed1ab_0 conda-forge async-lru 2.0.4 pyhd8ed1ab_0 conda-forge attrs 24.2.0 pyh71513ae_0 conda-forge aws-c-auth 0.7.20 h5f1c8d9_0 conda-forge aws-c-cal 0.6.12 h2ba76a8_0 conda-forge aws-c-common 0.9.17 h4ab18f5_0 conda-forge aws-c-compression 0.2.18 h36a0aea_4 conda-forge aws-c-event-stream 0.4.2 h161de36_10 conda-forge aws-c-http 0.8.1 h63f54a0_13 conda-forge aws-c-io 0.14.8 h96d4d28_0 conda-forge aws-c-mqtt 0.10.4 hcc7299c_2 conda-forge aws-c-s3 0.5.9 h10bd90f_0 conda-forge aws-c-sdkutils 0.1.16 h36a0aea_0 conda-forge aws-checksums 0.1.18 h36a0aea_4 conda-forge aws-crt-cpp 0.26.8 h4f3a3cc_11 conda-forge aws-sdk-cpp 1.11.267 h51dfee4_8 conda-forge azure-core-cpp 1.11.1 h91d86a7_1 conda-forge azure-storage-blobs-cpp 12.10.0 h00ab1b0_1 conda-forge azure-storage-common-cpp 12.5.0 h94269e2_4 conda-forge babel 2.14.0 pyhd8ed1ab_0 conda-forge beautifulsoup4 4.12.3 pyha770c72_0 conda-forge binutils_impl_linux-64 2.40 ha1999f0_7 conda-forge bleach 6.1.0 pyhd8ed1ab_0 conda-forge blosc 1.21.6 hef167b5_0 conda-forge boltons 24.0.0 pyhd8ed1ab_0 conda-forge brotli-python 1.1.0 py312h30efb56_1 conda-forge bwidget 1.9.14 ha770c72_1 conda-forge bzip2 1.0.8 h4bc722e_7 conda-forge c-ares 1.32.3 h4bc722e_0 conda-forge ca-certificates 2024.7.4 hbcca054_0 conda-forge cached-property 1.5.2 hd8ed1ab_1 conda-forge cached_property 1.5.2 pyha770c72_1 conda-forge cairo 1.18.0 hbb29018_2 conda-forge certifi 2024.7.4 pyhd8ed1ab_0 conda-forge cffi 1.17.0 py312h1671c18_0 conda-forge cfitsio 4.4.0 hbdc6101_1 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5.0.3 h7f98852_1004 conda-forge xorg-libxi 1.7.10 h4bc722e_1 conda-forge xorg-libxrender 0.9.11 hd590300_0 conda-forge xorg-libxt 1.3.0 hd590300_1 conda-forge xorg-libxtst 1.2.5 h4bc722e_0 conda-forge xorg-recordproto 1.14.2 h7f98852_1002 conda-forge xorg-renderproto 0.11.1 h7f98852_1002 conda-forge xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge xorg-xproto 7.0.31 h7f98852_1007 conda-forge xz 5.2.6 h166bdaf_0 conda-forge yaml 0.2.5 h7f98852_2 conda-forge yaml-cpp 0.8.0 h59595ed_0 conda-forge zeromq 4.3.5 h75354e8_4 conda-forge zipp 3.19.2 pyhd8ed1ab_0 conda-forge zlib 1.3.1 h4ab18f5_1 conda-forge zstandard 0.23.0 py312h3483029_0 conda-forge zstd 1.5.6 ha6fb4c9_0 conda-forge ```

Environment info

```shell active environment : rbase active env location : /opt/conda/envs/rbase shell level : 2 user config file : /root/.condarc populated config files : /opt/conda/.condarc conda version : 24.3.0 conda-build version : not installed python version : 3.10.14.final.0 solver : libmamba (default) virtual packages : __archspec=1=skylake __conda=24.3.0=0 __glibc=2.31=0 __linux=6.5.0=0 __unix=0=0 base environment : /opt/conda (writable) conda av data dir : /opt/conda/etc/conda conda av metadata url : None channel URLs : https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch package cache : /opt/conda/pkgs /root/.conda/pkgs envs directories : /opt/conda/envs /root/.conda/envs platform : linux-64 user-agent : conda/24.3.0 requests/2.31.0 CPython/3.10.14 Linux/6.5.0-35-generic ubuntu/20.04.6 glibc/2.31 solver/libmamba conda-libmamba-solver/24.1.0 libmambapy/1.5.8 UID:GID : 0:0 netrc file : None offline mode : False ```
mfansler commented 1 month ago

Do you have a minimal example with which we could reproduce the error?

mfansler commented 1 month ago

For now, I will turn on unit testing in the recipe.

Thanks for reporting this! ❤️

mfansler commented 1 month ago

Unit tests pass with latest builds. They should also be included in yours, if you'd like to try running them. Install r-tinytest then try tinytest::test_package('gdalcubes').

The linking analysis actually complains that we declare PROJ as a dependency (fixing its version that is associated with the package), even though none of this package's code appears to directly reference PROJ. That is, the recipe is already conservative with respect to PROJ and nothing showed up as undeclared linking (i.e., the usually sign of potential runtime errors).

Not much more to do - efficiently, at least - on our end without a failing test.