Issue:
Convert(source="tumor_filter.h5Seurat", dest = "h5ad")
Validating h5Seurat file
Adding data from loom as X
Adding counts from loom as raw
Transfering meta.data to obs
Adding dimensional reduction information for tsne (global)
Adding dimensional reduction information for umap (global)
Adding data from SCT as a layer
Adding data from Spatial as a layer
Error in layers$obj_copy_from(src_loc = source[["assays"]][[other]], src_name = layer.slot, :
HDF5-API Errors:
error #000: ../../../src/H5Ocopy.c in H5Ocopy(): line 275: unable to copy object
class: HDF5
major: Object header
minor: Unable to copy object
error #001: ../../../src/H5Ocopy.c in H5O_copy_obj(): line 1194: unable to copy object
class: HDF5
major: Object header
minor: Unable to copy object
error #002: ../../../src/H5Ocopy.c in H5O_copy_header(): line 1138: unable to copy object
class: HDF5
major: Object header
minor: Unable to copy object
error #003: ../../../src/H5Ocopy.c in H5O_copy_header_real(): line 854: unable to perform 'post copy' operation on message
class: HDF5
major: Object header
minor: Unable to initialize object
error #004: ../../../src/H5Ostab.c in H5O_stab_post_copy_file(): line 406: iteration operator failed
class: HDF5
major: Symbol table
minor: Unable to initialize object
error #005: ../../../
Issue: Convert(source="tumor_filter.h5Seurat", dest = "h5ad") Validating h5Seurat file Adding data from loom as X Adding counts from loom as raw Transfering meta.data to obs Adding dimensional reduction information for tsne (global) Adding dimensional reduction information for umap (global) Adding data from SCT as a layer Adding data from Spatial as a layer Error in layers$obj_copy_from(src_loc = source[["assays"]][[other]], src_name = layer.slot, : HDF5-API Errors: error #000: ../../../src/H5Ocopy.c in H5Ocopy(): line 275: unable to copy object class: HDF5 major: Object header minor: Unable to copy object
Environment (
conda list
):11
Details about
conda
and system (conda info
):