Closed marcosfelt closed 3 years ago
That /usr/lib/x86_64-linux-gnu/libstdc++.so.6
path is suspicious. It shouldn't be loading anything from the system's libraries.
I see that you have defaults
in your channels, as well as a lot of packages from pypi
and unknown locations. Makes me thing you are mixing system-created virtual envs with conda and hence the library confusion.
Could you create a new, separate environment just for RDKit and see if this reproduces?
conda create -n rdkit -c conda-forge rdkit
conda activate rdkit
python -c "import rdkit.Chem"
I played around a lot just now and tried adding an import of rdkit at the top of my top-level file, and that worked. Not completely sure why. Thanks for the suggestions!
Issue:
Conda seems to be missing some C files. Seems related to #3851. I ran the following install command:
This is the trace when I try to run
from rdkit import Chem
:Environment (
conda list
):Details about
conda
and system (conda info
):