search

conda-forge / spyder-feedstock

A conda-smithy repository for spyder.
BSD 3-Clause "New" or "Revised" License
1 stars 17 forks source link

Failure to run on MacOSX (underlying qt problem?) #134

Open efiring opened 2 years ago

efiring commented 2 years ago

Solution to issue cannot be found in the documentation.

Issue

Building Spyder in a minimal environment on a Macbook Pro (Intel), Macosx 12.4, it fails to run:

conda create -n test python=3.10 spyder
conda activate test 
(test) ~ $ spyder
The available OpenGL surface format was either not version 3.2 or higher or not a Core Profile.
Chromium on macOS will fall back to software rendering in this case.
Hardware acceleration and features such as WebGL will not be available.
fromIccProfile: failed minimal tag size sanity
PYLINTHOME is now '/Users/efiring/Library/Caches/pylint' but obsolescent '/Users/efiring/.pylint.d' is found; you can safely remove the latter
Qt WebEngine resources not found at /Users/efiring/miniconda3/envs/test/Resources. Trying parent directory...
Qt WebEngine resources not found at /Users/efiring/miniconda3/envs/test. Trying application directory...
Qt WebEngine resources not found at /Users/efiring/miniconda3/envs/test/bin. Trying fallback directory... The application MAY NOT work.
[0609/093644.314626:ERROR:icu_util.cc(251)] Couldn't mmap icu data file
/Users/efiring/miniconda3/envs/test/bin/pythonw: line 3: 92013 Trace/BPT trap: 5 /Users/efiring/miniconda3/envs/test/python.app/Contents/MacOS/python "$@"

This is prompted by problems with Qt in more complex contexts; I am using Spyder as a self-contained way to test the PyQt and Qt stack for basic functionality. The problem here is not encountered universally; another Matplotlib developer performed the same test, with no failure. I don't know what environment he was testing.

Installed packages

# packages in environment at /Users/efiring/miniconda3/envs/test:
#
# Name                    Version                   Build  Channel
alabaster                 0.7.12                     py_0    conda-forge
applaunchservices         0.3.0              pyhd8ed1ab_2    conda-forge
appnope                   0.1.3              pyhd8ed1ab_0    conda-forge
arrow                     1.2.2              pyhd8ed1ab_0    conda-forge
astroid                   2.11.5          py310h2ec42d9_0    conda-forge
atomicwrites              1.4.0              pyh9f0ad1d_0    conda-forge
attrs                     21.4.0             pyhd8ed1ab_0    conda-forge
autopep8                  1.6.0              pyhd8ed1ab_1    conda-forge
babel                     2.10.1             pyhd8ed1ab_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.11.1             pyha770c72_0    conda-forge
binaryornot               0.4.4                      py_1    conda-forge
black                     22.3.0             pyhd8ed1ab_0    conda-forge
bleach                    5.0.0              pyhd8ed1ab_0    conda-forge
brotlipy                  0.7.0           py310h1961e1f_1004    conda-forge
bzip2                     1.0.8                h0d85af4_4    conda-forge
ca-certificates           2022.5.18.1          h033912b_0    conda-forge
certifi                   2022.5.18.1     py310h2ec42d9_0    conda-forge
cffi                      1.15.0          py310hcc37b68_0    conda-forge
chardet                   4.0.0           py310h2ec42d9_3    conda-forge
charset-normalizer        2.0.12             pyhd8ed1ab_0    conda-forge
click                     8.1.3           py310h2ec42d9_0    conda-forge
cloudpickle               2.1.0              pyhd8ed1ab_0    conda-forge
colorama                  0.4.4              pyh9f0ad1d_0    conda-forge
cookiecutter              2.1.1              pyh6c4a22f_0    conda-forge
cryptography              37.0.2          py310h52c3658_0    conda-forge
dataclasses               0.8                pyhc8e2a94_3    conda-forge
debugpy                   1.6.0           py310h9d931ec_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
diff-match-patch          20200713           pyh9f0ad1d_0    conda-forge
dill                      0.3.5.1            pyhd8ed1ab_0    conda-forge
docutils                  0.18.1          py310h2ec42d9_1    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
flake8                    4.0.1              pyhd8ed1ab_2    conda-forge
gettext                   0.19.8.1          hd1a6beb_1008    conda-forge
giflib                    5.2.1                hbcb3906_2    conda-forge
gst-plugins-base          1.20.2               hda0ba4b_1    conda-forge
gstreamer                 1.20.2               hdc08c3f_1    conda-forge
icu                       70.1                 h96cf925_0    conda-forge
idna                      3.3                pyhd8ed1ab_0    conda-forge
imagesize                 1.3.0              pyhd8ed1ab_0    conda-forge
importlib-metadata        4.11.4          py310h2ec42d9_0    conda-forge
importlib_resources       5.7.1              pyhd8ed1ab_1    conda-forge
inflection                0.5.1              pyh9f0ad1d_0    conda-forge
intervaltree              3.0.2                      py_0    conda-forge
ipykernel                 6.13.1          py310ha188af9_0    conda-forge
ipython                   7.33.0          py310h2ec42d9_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
isort                     5.10.1             pyhd8ed1ab_0    conda-forge
jedi                      0.18.1          py310h2ec42d9_1    conda-forge
jellyfish                 0.9.0           py310h1961e1f_1    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
jinja2-time               0.2.0              pyhd8ed1ab_3    conda-forge
jpeg                      9e                   h5eb16cf_1    conda-forge
jsonschema                4.6.0              pyhd8ed1ab_0    conda-forge
jupyter_client            7.3.4              pyhd8ed1ab_0    conda-forge
jupyter_core              4.10.0          py310h2ec42d9_0    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
keyring                   23.6.0          py310h2ec42d9_0    conda-forge
krb5                      1.19.3               hb49756b_0    conda-forge
lazy-object-proxy         1.7.1           py310h1961e1f_1    conda-forge
lerc                      3.0                  he49afe7_0    conda-forge
libclang                  14.0.4          default_h55ffa42_0    conda-forge
libclang13                14.0.4          default_hb5731bd_0    conda-forge
libcxx                    14.0.4               hc203e6f_0    conda-forge
libdeflate                1.10                 h0d85af4_0    conda-forge
libedit                   3.1.20191231         h0678c8f_2    conda-forge
libffi                    3.4.2                h0d85af4_5    conda-forge
libglib                   2.70.2               hf1fb8c0_4    conda-forge
libiconv                  1.16                 haf1e3a3_0    conda-forge
libllvm14                 14.0.4               h41df66c_0    conda-forge
libogg                    1.3.4                h35c211d_1    conda-forge
libopus                   1.3.1                hc929b4f_1    conda-forge
libpng                    1.6.37               h7cec526_2    conda-forge
libpq                     14.3                 hf6bb32a_0    conda-forge
libsodium                 1.0.18               hbcb3906_1    conda-forge
libspatialindex           1.9.3                he49afe7_4    conda-forge
libtiff                   4.4.0                hfca7e8f_0    conda-forge
libvorbis                 1.3.7                h046ec9c_0    conda-forge
libwebp                   1.2.2                h28dabe5_0    conda-forge
libwebp-base              1.2.2                h0d85af4_1    conda-forge
libzlib                   1.2.12               h6c3fc93_0    conda-forge
lz4-c                     1.9.3                he49afe7_1    conda-forge
markupsafe                2.1.1           py310h1961e1f_1    conda-forge
matplotlib-inline         0.1.3              pyhd8ed1ab_0    conda-forge
mccabe                    0.6.1                      py_1    conda-forge
mistune                   0.8.4           py310he24745e_1005    conda-forge
mypy_extensions           0.4.3           py310h2ec42d9_5    conda-forge
mysql-common              8.0.29               h924029e_1    conda-forge
mysql-libs                8.0.29               h3cab752_1    conda-forge
nbclient                  0.6.4              pyhd8ed1ab_1    conda-forge
nbconvert                 6.5.0              pyhd8ed1ab_0    conda-forge
nbconvert-core            6.5.0              pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          6.5.0              pyhd8ed1ab_0    conda-forge
nbformat                  5.4.0              pyhd8ed1ab_0    conda-forge
ncurses                   6.3                  h96cf925_1    conda-forge
nest-asyncio              1.5.5              pyhd8ed1ab_0    conda-forge
nspr                      4.32                 hcd9eead_1    conda-forge
nss                       3.78                 ha8197d3_0    conda-forge
numpydoc                  1.2.1              pyhd8ed1ab_0    conda-forge
openssl                   1.1.1o               hfe4f2af_0    conda-forge
packaging                 21.3               pyhd8ed1ab_0    conda-forge
pandoc                    2.18                 h694c41f_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
pathspec                  0.9.0              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 he49afe7_0    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pip                       22.1.2             pyhd8ed1ab_0    conda-forge
platformdirs              2.5.1              pyhd8ed1ab_0    conda-forge
pluggy                    1.0.0           py310h2ec42d9_3    conda-forge
prompt-toolkit            3.0.29             pyha770c72_0    conda-forge
psutil                    5.9.1           py310h6c45266_0    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pycodestyle               2.8.0              pyhd8ed1ab_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pydocstyle                6.1.1              pyhd8ed1ab_0    conda-forge
pyflakes                  2.4.0              pyhd8ed1ab_0    conda-forge
pygments                  2.12.0             pyhd8ed1ab_0    conda-forge
pylint                    2.14.1             pyhd8ed1ab_0    conda-forge
pyls-spyder               0.4.0              pyhd8ed1ab_0    conda-forge
pyobjc-core               8.5             py310h209c1a4_0    conda-forge
pyobjc-framework-cocoa    8.5             py310h209c1a4_0    conda-forge
pyobjc-framework-coreservices 8.5             py310h6c45266_1    conda-forge
pyobjc-framework-fsevents 8.5             py310h2ec42d9_1    conda-forge
pyopenssl                 22.0.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.0.9              pyhd8ed1ab_0    conda-forge
pyqt                      5.15.4          py310h57cebac_1    conda-forge
pyqt5-sip                 12.9.0                   pypi_0    pypi
pyqtwebengine             5.15.4          py310h57cebac_1    conda-forge
pyrsistent                0.18.1          py310h1961e1f_1    conda-forge
pysocks                   1.7.1           py310h2ec42d9_5    conda-forge
python                    3.10.4          h8b4d769_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.15.3             pyhd8ed1ab_0    conda-forge
python-lsp-black          1.2.1              pyhd8ed1ab_0    conda-forge
python-lsp-jsonrpc        1.0.0              pyhd8ed1ab_0    conda-forge
python-lsp-server         1.4.1              pyhd8ed1ab_1    conda-forge
python-slugify            6.1.2              pyhd8ed1ab_0    conda-forge
python.app                1.4             py310he24745e_0    conda-forge
python_abi                3.10                    2_cp310    conda-forge
pytz                      2022.1             pyhd8ed1ab_0    conda-forge
pyyaml                    6.0             py310h1961e1f_4    conda-forge
pyzmq                     23.1.0          py310h85fb675_0    conda-forge
qdarkstyle                3.0.3              pyhd8ed1ab_0    conda-forge
qstylizer                 0.2.1              pyhd8ed1ab_0    conda-forge
qt-main                   5.15.4               h938c29d_1    conda-forge
qt-webengine              5.15.4               h72ca1e5_3    conda-forge
qtawesome                 1.1.1              pyhd8ed1ab_0    conda-forge
qtconsole                 5.3.1              pyhd8ed1ab_0    conda-forge
qtconsole-base            5.3.1              pyha770c72_0    conda-forge
qtpy                      2.1.0              pyhd8ed1ab_0    conda-forge
readline                  8.1                  h05e3726_0    conda-forge
requests                  2.28.0             pyhd8ed1ab_0    conda-forge
rope                      1.1.1              pyhd8ed1ab_0    conda-forge
rtree                     1.0.0           py310had9ce37_1    conda-forge
setuptools                62.3.3          py310h2ec42d9_0    conda-forge
sip                       6.5.1           py310hba3363e_2    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
snowballstemmer           2.2.0              pyhd8ed1ab_0    conda-forge
sortedcontainers          2.4.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.1              pyhd8ed1ab_0    conda-forge
sphinx                    5.0.1              pyh6c4a22f_0    conda-forge
sphinxcontrib-applehelp   1.0.2                      py_0    conda-forge
sphinxcontrib-devhelp     1.0.2                      py_0    conda-forge
sphinxcontrib-htmlhelp    2.0.0              pyhd8ed1ab_0    conda-forge
sphinxcontrib-jsmath      1.0.1                      py_0    conda-forge
sphinxcontrib-qthelp      1.0.3                      py_0    conda-forge
sphinxcontrib-serializinghtml 1.1.5              pyhd8ed1ab_2    conda-forge
spyder                    5.3.1           py310h2ec42d9_0    conda-forge
spyder-kernels            2.3.1           py310h2ec42d9_0    conda-forge
sqlite                    3.38.5               hd9f0692_0    conda-forge
text-unidecode            1.3                        py_0    conda-forge
textdistance              4.2.2              pyhd8ed1ab_0    conda-forge
three-merge               0.1.1              pyh9f0ad1d_0    conda-forge
tinycss2                  1.1.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.12               h5dbffcc_0    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tomlkit                   0.11.0             pyha770c72_0    conda-forge
tornado                   6.1             py310h1961e1f_3    conda-forge
traitlets                 5.2.2.post1        pyhd8ed1ab_0    conda-forge
typed-ast                 1.5.4           py310h6c45266_0    conda-forge
typing                    3.10.0.0           pyhd8ed1ab_0    conda-forge
typing_extensions         4.2.0              pyha770c72_1    conda-forge
tzdata                    2022a                h191b570_0    conda-forge
ujson                     5.3.0           py310hd4537e4_0    conda-forge
unidecode                 1.3.4              pyhd8ed1ab_0    conda-forge
urllib3                   1.26.9             pyhd8ed1ab_0    conda-forge
watchdog                  2.1.8           py310h5027ba8_1    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
wrapt                     1.14.1          py310h6c45266_0    conda-forge
wurlitzer                 3.0.2              pyhd8ed1ab_2    conda-forge
xz                        5.2.5                haf1e3a3_1    conda-forge
yaml                      0.2.5                h0d85af4_2    conda-forge
yapf                      0.32.0             pyhd8ed1ab_0    conda-forge
zeromq                    4.3.4                he49afe7_1    conda-forge
zipp                      3.8.0              pyhd8ed1ab_0    conda-forge
zlib                      1.2.12               h6c3fc93_0    conda-forge
zstd                      1.5.2                ha9df2e0_1    conda-forge

Environment info

active environment : test
    active env location : /Users/efiring/miniconda3/envs/test
            shell level : 1
       user config file : /Users/efiring/.condarc
 populated config files : /Users/efiring/.condarc
          conda version : 4.13.0
    conda-build version : not installed
         python version : 3.10.4.final.0
       virtual packages : __osx=12.4=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /Users/efiring/miniconda3  (writable)
      conda av data dir : /Users/efiring/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/osx-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/osx-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/osx-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /Users/efiring/miniconda3/pkgs
                          /Users/efiring/.conda/pkgs
       envs directories : /Users/efiring/miniconda3/envs
                          /Users/efiring/.conda/envs
               platform : osx-64
             user-agent : conda/4.13.0 requests/2.27.1 CPython/3.10.4 Darwin/21.5.0 OSX/12.4
                UID:GID : 1024:1076
             netrc file : None
           offline mode : False
ccordoba12 commented 2 years ago

Please run

conda activate test
conda install --force-reinstall python.app

That should fix your error.

efiring commented 2 years ago

Sadly, it doesn't:

(test) ~/currents/programs/pycurrents $ conda install --force-reinstall python.app
Collecting package metadata (current_repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /Users/efiring/miniconda3/envs/test

  added / updated specs:
    - python.app

Proceed ([y]/n)? y

Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(test) ~/currents/programs/pycurrents $ spyder
The available OpenGL surface format was either not version 3.2 or higher or not a Core Profile.
Chromium on macOS will fall back to software rendering in this case.
Hardware acceleration and features such as WebGL will not be available.
fromIccProfile: failed minimal tag size sanity
Qt WebEngine resources not found at /Users/efiring/miniconda3/envs/test/Resources. Trying parent directory...
Qt WebEngine resources not found at /Users/efiring/miniconda3/envs/test. Trying application directory...
Qt WebEngine resources not found at /Users/efiring/miniconda3/envs/test/bin. Trying fallback directory... The application MAY NOT work.
[0609/131338.834281:ERROR:icu_util.cc(251)] Couldn't mmap icu data file
/Users/efiring/miniconda3/envs/test/bin/pythonw: line 3: 94084 Trace/BPT trap: 5       /Users/efiring/miniconda3/envs/test/python.app/Contents/MacOS/python "$@"
ccordoba12 commented 2 years ago

Ok, I don't know what's happening in your case then.

Could you try with other Python versions (3.9, 3.8)? Perhaps it's an issue with Python 3.10.

efiring commented 2 years ago

Same result with 3.8:

~/currents/programs/pycurrents $ conda activate test_308
(test_308) ~/currents/programs/pycurrents $ spyder
The available OpenGL surface format was either not version 3.2 or higher or not a Core Profile.
Chromium on macOS will fall back to software rendering in this case.
Hardware acceleration and features such as WebGL will not be available.
fromIccProfile: failed minimal tag size sanity
Qt WebEngine resources not found at /Users/efiring/miniconda3/envs/test_308/Resources. Trying parent directory...
Qt WebEngine resources not found at /Users/efiring/miniconda3/envs/test_308. Trying application directory...
Qt WebEngine resources not found at /Users/efiring/miniconda3/envs/test_308/bin. Trying fallback directory... The application MAY NOT work.
[0609/134653.738713:ERROR:icu_util.cc(251)] Couldn't mmap icu data file
/Users/efiring/miniconda3/envs/test_308/bin/pythonw: line 3: 95658 Trace/BPT trap: 5       /Users/efiring/miniconda3/envs/test_308/python.app/Contents/MacOS/python "$@"
leofang commented 2 years ago

It works on my M1, but I realize you're using Intel Mac...

$ spyder
The available OpenGL surface format was either not version 3.2 or higher or not a Core Profile.
Chromium on macOS will fall back to software rendering in this case.
Hardware acceleration and features such as WebGL will not be available.
fromIccProfile: failed minimal tag size sanity
leofang commented 2 years ago

btw I noticed something odd: In my fresh, conda-forge-only env, I see conda list gives

pyqt                      5.15.4          py310h8775411_1    conda-forge
pyqt5-sip                 12.9.0                   pypi_0    pypi

same as in OP's env. But why would pypi listed here? During conda install I see this included in the list 

  pyqt               conda-forge/osx-arm64::pyqt-5.15.4-py310h8775411_1
  pyqt5-sip          conda-forge/osx-arm64::pyqt5-sip-12.9.0-py310hb07a4bc_1
ocefpaf commented 2 years ago

Thanks for answering the call for testing @leofang. Glad it works on M1. I'm still puzzle why it fails on Intel Mac. (It also worked in my tests on Windows and Linux).

BTW, the pypi label in the listing is an old bug that still eludes conda devs but it is "mostly harmless."

ccordoba12 commented 2 years ago

This is odd because we haven't received issues about this problem in our main issue tracker.

@mrclary, do you have an Intel Mac to test this?

mrclary commented 2 years ago

Unfortunately, I only have the following combinations at present:

So I cannot test 12.4 on Intel. I may be able to test this in the near future, however, when my company's IT allows me to update to Monterey.

efiring commented 2 years ago

This looks like a problem with Qtwebengine compilation and packaging. https://doc.qt.io/qt-5/qtwebengine-deploying.html, in listing necessary resources, includes the line,

icudtl.dat provides support for International Components for Unicode (ICU). It is the Chromium version of ICU, which is not needed if Qt WebEngine was configured to use the system ICU.

The error messages show "Resources" not being found after a search, followed by halting on "Couldn't mmap icu data file". Maybe some other application--like the Chrome browser--puts icudtl.dat in a system or "fallback" location, and I don't have that application installed, but most people do--hence the lack of other reports of this failure.

efiring commented 2 years ago

I now have Chrome running--it doesn't make a difference. Nevertheless, the error messages point to a problem with Resource configuration and packaging.

efiring commented 2 years ago

https://github.com/conda-forge/qt-webengine-feedstock/commit/7edb14f9a11c27fe95dd93b72ebfcab474bb8436 looks related.

ccordoba12 commented 2 years ago

@efiring, could you try with older qt-main and webengine builds to see if the error is not present?

efiring commented 2 years ago 
~/work/teaching/data_analysis/web $ conda search qt-webengine
Loading channels: done
# Name                       Version           Build  Channel
qt-webengine                  5.15.4      h055bd26_2  conda-forge
qt-webengine                  5.15.4      h3a3182f_1  conda-forge
qt-webengine                  5.15.4      h72ca1e5_3  conda-forge

Only 5.15.4 builds are available. Do you mean try the earliest of these?

efiring commented 2 years ago

Using 

conda create -n qt_earlier qt-main=5.15.4=h938c29d_0 qt-webengine=5.15.4=h055bd26_2 spyder

to get the earliest 5.15.4 builds, I get the same error.

ccordoba12 commented 2 years ago

I think @steff456 has an Intel Mac and is running Monterey.

@steff456, could you check this if that's the case?

steff456 commented 2 years ago

@ccordoba12 I'm still in Catalina

efiring commented 2 years ago

I can make environment in which Spyder works on my machine with:

conda create -n test_5.12 python=3.9 pyqt=5.12 pyqtwebengine=5.12 spyder

The only terminal message when running it is

Layer-backing can not be explicitly controlled on 10.14 when built against the 10.14 SDK

The package list is

(test_5.12) ~/work/Calil $ conda list
# packages in environment at /Users/efiring/miniconda3/envs/test_5.12:
#
# Name                    Version                   Build  Channel
alabaster                 0.7.12                     py_0    conda-forge
applaunchservices         0.3.0              pyhd8ed1ab_2    conda-forge
appnope                   0.1.3              pyhd8ed1ab_0    conda-forge
arrow                     1.2.2              pyhd8ed1ab_0    conda-forge
astroid                   2.11.6           py39h6e9494a_0    conda-forge
atomicwrites              1.4.0              pyh9f0ad1d_0    conda-forge
attrs                     21.4.0             pyhd8ed1ab_0    conda-forge
autopep8                  1.6.0              pyhd8ed1ab_1    conda-forge
babel                     2.10.2             pyhd8ed1ab_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.11.1             pyha770c72_0    conda-forge
binaryornot               0.4.4                      py_1    conda-forge
black                     22.3.0             pyhd8ed1ab_0    conda-forge
bleach                    5.0.0              pyhd8ed1ab_0    conda-forge
brotlipy                  0.7.0           py39h63b48b0_1004    conda-forge
bzip2                     1.0.8                h0d85af4_4    conda-forge
ca-certificates           2022.5.18.1          h033912b_0    conda-forge
certifi                   2022.5.18.1      py39h6e9494a_0    conda-forge
cffi                      1.15.0           py39he338e87_0    conda-forge
chardet                   4.0.0            py39h6e9494a_3    conda-forge
charset-normalizer        2.0.12             pyhd8ed1ab_0    conda-forge
click                     8.1.3            py39h6e9494a_0    conda-forge
cloudpickle               2.1.0              pyhd8ed1ab_0    conda-forge
colorama                  0.4.4              pyh9f0ad1d_0    conda-forge
cookiecutter              2.1.1              pyh6c4a22f_0    conda-forge
cryptography              37.0.2           py39h9c2a9ce_0    conda-forge
dataclasses               0.8                pyhc8e2a94_3    conda-forge
dbus                      1.13.6               h811a1a6_3    conda-forge
debugpy                   1.6.0            py39hfd1d529_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
diff-match-patch          20200713           pyh9f0ad1d_0    conda-forge
dill                      0.3.5.1            pyhd8ed1ab_0    conda-forge
docutils                  0.18.1           py39h6e9494a_1    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
expat                     2.4.8                h96cf925_0    conda-forge
flake8                    4.0.1              pyhd8ed1ab_2    conda-forge
gettext                   0.19.8.1          hd1a6beb_1008    conda-forge
icu                       69.1                 he49afe7_0    conda-forge
idna                      3.3                pyhd8ed1ab_0    conda-forge
imagesize                 1.3.0              pyhd8ed1ab_0    conda-forge
importlib-metadata        4.11.4           py39h6e9494a_0    conda-forge
importlib_metadata        4.11.4               hd8ed1ab_0    conda-forge
importlib_resources       5.7.1              pyhd8ed1ab_1    conda-forge
inflection                0.5.1              pyh9f0ad1d_0    conda-forge
intervaltree              3.0.2                      py_0    conda-forge
ipykernel                 6.13.1           py39h71a6800_0    conda-forge
ipython                   7.33.0           py39h6e9494a_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
isort                     5.10.1             pyhd8ed1ab_0    conda-forge
jedi                      0.18.1           py39h6e9494a_1    conda-forge
jellyfish                 0.9.0            py39h63b48b0_1    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
jinja2-time               0.2.0              pyhd8ed1ab_3    conda-forge
jpeg                      9e                   h5eb16cf_1    conda-forge
jsonschema                4.6.0              pyhd8ed1ab_0    conda-forge
jupyter_client            7.3.4              pyhd8ed1ab_0    conda-forge
jupyter_core              4.10.0           py39h6e9494a_0    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
keyring                   23.6.0           py39h6e9494a_0    conda-forge
krb5                      1.19.3               hb49756b_0    conda-forge
lazy-object-proxy         1.7.1            py39h63b48b0_1    conda-forge
libclang                  13.0.1          default_he082bbe_0    conda-forge
libcxx                    14.0.5               hce7ea42_1    conda-forge
libedit                   3.1.20191231         h0678c8f_2    conda-forge
libffi                    3.4.2                h0d85af4_5    conda-forge
libglib                   2.70.2               hf1fb8c0_4    conda-forge
libiconv                  1.16                 haf1e3a3_0    conda-forge
libllvm13                 13.0.1               h64f94b2_2    conda-forge
libpng                    1.6.37               h7cec526_2    conda-forge
libpq                     14.3                 hf6bb32a_0    conda-forge
libsodium                 1.0.18               hbcb3906_1    conda-forge
libspatialindex           1.9.3                he49afe7_4    conda-forge
libzlib                   1.2.12               h6c3fc93_0    conda-forge
lz4-c                     1.9.3                he49afe7_1    conda-forge
markupsafe                2.1.1            py39h63b48b0_1    conda-forge
matplotlib-inline         0.1.3              pyhd8ed1ab_0    conda-forge
mccabe                    0.6.1                      py_1    conda-forge
mistune                   0.8.4           py39h89e85a6_1005    conda-forge
mypy_extensions           0.4.3            py39h6e9494a_5    conda-forge
mysql-common              8.0.29               h924029e_1    conda-forge
mysql-libs                8.0.29               h3cab752_1    conda-forge
nbclient                  0.6.4              pyhd8ed1ab_1    conda-forge
nbconvert                 6.5.0              pyhd8ed1ab_0    conda-forge
nbconvert-core            6.5.0              pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          6.5.0              pyhd8ed1ab_0    conda-forge
nbformat                  5.4.0              pyhd8ed1ab_0    conda-forge
ncurses                   6.3                  h96cf925_1    conda-forge
nest-asyncio              1.5.5              pyhd8ed1ab_0    conda-forge
nspr                      4.32                 hcd9eead_1    conda-forge
nss                       3.78                 ha8197d3_0    conda-forge
numpydoc                  1.2.1              pyhd8ed1ab_0    conda-forge
openssl                   1.1.1o               hfe4f2af_0    conda-forge
packaging                 21.3               pyhd8ed1ab_0    conda-forge
pandoc                    2.18                 h694c41f_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
pathspec                  0.9.0              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 he49afe7_0    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pip                       22.1.2             pyhd8ed1ab_0    conda-forge
platformdirs              2.5.1              pyhd8ed1ab_0    conda-forge
pluggy                    1.0.0            py39h6e9494a_3    conda-forge
prompt-toolkit            3.0.29             pyha770c72_0    conda-forge
psutil                    5.9.1            py39h701faf5_0    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pycodestyle               2.8.0              pyhd8ed1ab_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pydocstyle                6.1.1              pyhd8ed1ab_0    conda-forge
pyflakes                  2.4.0              pyhd8ed1ab_0    conda-forge
pygments                  2.12.0             pyhd8ed1ab_0    conda-forge
pylint                    2.14.1             pyhd8ed1ab_0    conda-forge
pyls-spyder               0.4.0              pyhd8ed1ab_0    conda-forge
pyobjc-core               8.5              py39hf3ca4cb_0    conda-forge
pyobjc-framework-cocoa    8.5              py39hf3ca4cb_0    conda-forge
pyobjc-framework-coreservices 8.5              py39h701faf5_1    conda-forge
pyobjc-framework-fsevents 8.5              py39h6e9494a_1    conda-forge
pyopenssl                 22.0.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.0.9              pyhd8ed1ab_0    conda-forge
pyqt                      5.12.3           py39h6e9494a_8    conda-forge
pyqt-impl                 5.12.3           py39he44290a_8    conda-forge
pyqt5-sip                 4.19.18          py39h15fb055_8    conda-forge
pyqtchart                 5.12             py39he44290a_8    conda-forge
pyqtwebengine             5.12.1           py39he44290a_8    conda-forge
pyrsistent                0.18.1           py39h63b48b0_1    conda-forge
pysocks                   1.7.1            py39h6e9494a_5    conda-forge
python                    3.9.13          h57e37ff_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.15.3             pyhd8ed1ab_0    conda-forge
python-lsp-black          1.2.1              pyhd8ed1ab_0    conda-forge
python-lsp-jsonrpc        1.0.0              pyhd8ed1ab_0    conda-forge
python-lsp-server         1.4.1              pyhd8ed1ab_1    conda-forge
python-slugify            6.1.2              pyhd8ed1ab_0    conda-forge
python.app                1.4              py39h89e85a6_0    conda-forge
python_abi                3.9                      2_cp39    conda-forge
pytz                      2022.1             pyhd8ed1ab_0    conda-forge
pyyaml                    6.0              py39h63b48b0_4    conda-forge
pyzmq                     23.1.0           py39hd639792_0    conda-forge
qdarkstyle                3.0.3              pyhd8ed1ab_0    conda-forge
qstylizer                 0.2.1              pyhd8ed1ab_0    conda-forge
qt                        5.12.9               h2a607e2_5    conda-forge
qtawesome                 1.1.1              pyhd8ed1ab_0    conda-forge
qtconsole                 5.3.1              pyhd8ed1ab_0    conda-forge
qtconsole-base            5.3.1              pyha770c72_0    conda-forge
qtpy                      2.1.0              pyhd8ed1ab_0    conda-forge
readline                  8.1.2                h3899abd_0    conda-forge
requests                  2.28.0             pyhd8ed1ab_0    conda-forge
rope                      1.1.1              pyhd8ed1ab_0    conda-forge
rtree                     1.0.0            py39h7d0d40a_1    conda-forge
setuptools                62.3.4           py39h6e9494a_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
snowballstemmer           2.2.0              pyhd8ed1ab_0    conda-forge
sortedcontainers          2.4.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.1              pyhd8ed1ab_0    conda-forge
sphinx                    5.0.1              pyh6c4a22f_0    conda-forge
sphinxcontrib-applehelp   1.0.2                      py_0    conda-forge
sphinxcontrib-devhelp     1.0.2                      py_0    conda-forge
sphinxcontrib-htmlhelp    2.0.0              pyhd8ed1ab_0    conda-forge
sphinxcontrib-jsmath      1.0.1                      py_0    conda-forge
sphinxcontrib-qthelp      1.0.3                      py_0    conda-forge
sphinxcontrib-serializinghtml 1.1.5              pyhd8ed1ab_2    conda-forge
spyder                    5.3.1            py39h6e9494a_0    conda-forge
spyder-kernels            2.3.1            py39h6e9494a_0    conda-forge
sqlite                    3.38.5               hd9f0692_0    conda-forge
text-unidecode            1.3                        py_0    conda-forge
textdistance              4.2.2              pyhd8ed1ab_0    conda-forge
three-merge               0.1.1              pyh9f0ad1d_0    conda-forge
tinycss2                  1.1.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.12               h5dbffcc_0    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tomlkit                   0.11.0             pyha770c72_0    conda-forge
tornado                   6.1              py39h63b48b0_3    conda-forge
traitlets                 5.2.2.post1        pyhd8ed1ab_0    conda-forge
typed-ast                 1.5.4            py39h701faf5_0    conda-forge
typing                    3.10.0.0           pyhd8ed1ab_0    conda-forge
typing-extensions         4.2.0                hd8ed1ab_1    conda-forge
typing_extensions         4.2.0              pyha770c72_1    conda-forge
tzdata                    2022a                h191b570_0    conda-forge
ujson                     5.3.0            py39hd408605_0    conda-forge
unidecode                 1.3.4              pyhd8ed1ab_0    conda-forge
urllib3                   1.26.9             pyhd8ed1ab_0    conda-forge
watchdog                  2.1.9            py39h0056ad7_0    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
wrapt                     1.14.1           py39h701faf5_0    conda-forge
wurlitzer                 3.0.2              pyhd8ed1ab_2    conda-forge
xz                        5.2.5                haf1e3a3_1    conda-forge
yaml                      0.2.5                h0d85af4_2    conda-forge
yapf                      0.32.0             pyhd8ed1ab_0    conda-forge
zeromq                    4.3.4                he49afe7_1    conda-forge
zipp                      3.8.0              pyhd8ed1ab_0    conda-forge
zlib                      1.2.12               h6c3fc93_0    conda-forge
zstd                      1.5.2                ha9df2e0_1    conda-forge
larsoner commented 2 years ago

On 12.3.1 I get:

$ conda create -n test -c conda-forge python=3.10 spyder
...
$ conda activate test
$ conda list | grep qt
pyqt                      5.15.4          py310h57cebac_1    conda-forge
pyqt5-sip                 12.9.0                   pypi_0    pypi
pyqtwebengine             5.15.4          py310h57cebac_1    conda-forge
qt-main                   5.15.4               h938c29d_2    conda-forge
qt-webengine              5.15.4               h72ca1e5_3    conda-forge
qtawesome                 1.1.1              pyhd8ed1ab_0    conda-forge
qtconsole                 5.3.1              pyhd8ed1ab_0    conda-forge
qtconsole-base            5.3.1              pyha770c72_0    conda-forge
qtpy                      2.1.0              pyhd8ed1ab_0    conda-forge
sphinxcontrib-qthelp      1.0.3                      py_0    conda-forge
$ spyder
The available OpenGL surface format was either not version 3.2 or higher or not a Core Profile.
Chromium on macOS will fall back to software rendering in this case.
Hardware acceleration and features such as WebGL will not be available.
fromIccProfile: failed minimal tag size sanity
PYLINTHOME is now '/Users/larsoner/Library/Caches/pylint' but obsolescent '/Users/larsoner/.pylint.d' is found; you can safely remove the latter

And Spyder works fine. I'll install the update to 12.4 now and restart...

harryHoward commented 1 year ago

I get the same message after launching spyder on OSX Mojave 10.14.6 MacBook Pro (13-inch, 2017, Two Thunderbolt 3 ports) 2.3 GHz Intel Core i5

I tried using spyder in both conda environments suggested above: conda create -n test_5.12 python=3.9 pyqt=5.12 pyqtwebengine=5.12 spyder conda create -n test -c conda-forge python=3.10 spyder

Upon launching spyder, both environments produce a segmentation fault: /opt/miniconda3/envs/test/bin/pythonw: line 3: 2328 Segmentation fault: 11 /opt/miniconda3/envs/test/python.app/Contents/MacOS/python "$@"

I have also tried creating many other environments with different versions of Python, to no avail. So far, I can only run it from a bare base environment, with the message: The available OpenGL surface format was either not version 3.2 or higher or not a Core Profile. Chromium on macOS will fall back to software rendering in this case. Hardware acceleration and features such as WebGL will not be available. fromIccProfile: failed minimal tag size sanity

Note that I have the Brave browser installed, which is built on Chrome. It doesn't matter whether Brave is open or not, spyder crashes in any non-base environment.

mrclary commented 3 days ago

@ccordoba12, can we close this issue as stale?

ccordoba12 commented 3 days ago

Upon launching spyder, both environments produce a segmentation fault: /opt/miniconda3/envs/test/bin/pythonw: line 3: 2328 Segmentation fault: 11 /opt/miniconda3/envs/test/python.app/Contents/MacOS/python "$@"

This is still a problem that affects some users to this day and I don't know how to solve it. It seems the trick that did it before (see https://github.com/conda-forge/spyder-feedstock/issues/134#issuecomment-1151692359), fails to fix it now.