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conda-forge / voms-clients-feedstock

A conda-smithy repository for voms-clients.
BSD 3-Clause "New" or "Revised" License
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Location of jar files ... #5

Open dietrichliko opened 2 years ago

dietrichliko commented 2 years ago

Solution to issue cannot be found in the documentation.

Issue

Hi!

I have installed voms-clients in my conda environment. There seems to be a problem with the location of the jar files.

Basically, they are installed in

.../voms-clients/lib/voms-clients/

In the scripts voms-proxy-init the location is hardcoded with

.../voms-clients/lib/

For me it works, if I patch the location voms-proxy-init ....

Thanks a lot!

Cheers, Dietrich

voms-clients-3.3.2-h3e2b116_1.json.txt

Installed packages

# packages in environment at /groups/hephy/cms/dietrich.liko/conda/envs/mrtools-root624-py310:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       1_gnu    conda-forge
_sysroot_linux-64_curr_repodata_hack 3                   h5bd9786_13    conda-forge
afterimage                1.21              ha9998ff_1003    conda-forge
alsa-lib                  1.2.3                h516909a_0    conda-forge
argon2-cffi               21.3.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0          py310h6acc77f_1    conda-forge
asttokens                 2.0.5              pyhd8ed1ab_0    conda-forge
atk-1.0                   2.36.0               h3371d22_4    conda-forge
attrs                     21.4.0             pyhd8ed1ab_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
binutils                  2.36.1               hdd6e379_2    conda-forge
binutils_impl_linux-64    2.36.1               h193b22a_2    conda-forge
binutils_linux-64         2.36                 hf3e587d_6    conda-forge
black                     22.1.0             pyhd8ed1ab_0    conda-forge
bleach                    4.1.0              pyhd8ed1ab_0    conda-forge
brotlipy                  0.7.0           py310h6acc77f_1003    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
c-compiler                1.3.0                h7f98852_0    conda-forge
ca-certificates           2021.10.8            ha878542_0    conda-forge
cachecontrol              0.12.10            pyhd8ed1ab_0    conda-forge
cachy                     0.3.0                      py_0    conda-forge
cairo                     1.16.0            h6cf1ce9_1008    conda-forge
certifi                   2021.10.8       py310hff52083_1    conda-forge
cffi                      1.15.0          py310h0fdd8cc_0    conda-forge
cfitsio                   4.0.0                h9a35b8e_0    conda-forge
charset-normalizer        2.0.12             pyhd8ed1ab_0    conda-forge
cleo                      0.8.1              pyhd8ed1ab_2    conda-forge
click                     8.0.4           py310hff52083_0    conda-forge
clikit                    0.6.2              pyh9f0ad1d_0    conda-forge
cmake                     3.22.2               h1021d11_0    conda-forge
colorama                  0.4.4              pyh9f0ad1d_0    conda-forge
compilers                 1.3.0                ha770c72_0    conda-forge
crashtest                 0.3.1              pyhd8ed1ab_0    conda-forge
cryptography              36.0.1          py310h685ca39_0    conda-forge
curl                      7.81.0               h2574ce0_0    conda-forge
cxx-compiler              1.3.0                h4bd325d_0    conda-forge
dataclasses               0.8                pyhc8e2a94_3    conda-forge
davix                     0.8.0                h40e8b40_3    conda-forge
dbus                      1.13.6               h5008d03_3    conda-forge
debugpy                   1.5.1           py310h122e73d_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
distlib                   0.3.4              pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
executing                 0.8.3              pyhd8ed1ab_0    conda-forge
expat                     2.4.6                h27087fc_0    conda-forge
fftw                      3.3.10          nompi_h77c792f_102    conda-forge
filelock                  3.6.0              pyhd8ed1ab_0    conda-forge
flit-core                 3.7.1              pyhd8ed1ab_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.13.96              ha180cfb_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fortran-compiler          1.3.0                h1990efc_0    conda-forge
freetype                  2.10.4               h0708190_1    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
ftgl                      2.4.0                hbcb1f35_0    conda-forge
gcc                       9.4.0                h192d537_6    conda-forge
gcc_impl_linux-64         9.4.0               h03d3576_13    conda-forge
gcc_linux-64              9.4.0                h391b98a_6    conda-forge
gdk-pixbuf                2.42.6               h04a7f16_0    conda-forge
gettext                   0.19.8.1          h73d1719_1008    conda-forge
gfortran                  9.4.0                h2018a41_6    conda-forge
gfortran_impl_linux-64    9.4.0               h0003116_13    conda-forge
gfortran_linux-64         9.4.0                hf0ab688_6    conda-forge
giflib                    5.2.1                h36c2ea0_2    conda-forge
git                       2.35.0          pl5321hc30692c_0    conda-forge
gl2ps                     1.4.2                h0708190_0    conda-forge
glew                      2.1.0                h9c3ff4c_2    conda-forge
graphite2                 1.3.13            h58526e2_1001    conda-forge
graphviz                  2.50.0               h85b4f2f_1    conda-forge
gsl                       2.7                  he838d99_0    conda-forge
gsoap                     2.8.119              h90a1d37_0    conda-forge
gtk2                      2.24.33              h539f30e_1    conda-forge
gts                       0.7.6                h64030ff_2    conda-forge
gxx                       9.4.0                h192d537_6    conda-forge
gxx_impl_linux-64         9.4.0               h03d3576_13    conda-forge
gxx_linux-64              9.4.0                h0316aca_6    conda-forge
harfbuzz                  2.9.1                h83ec7ef_1    conda-forge
html5lib                  1.1                pyh9f0ad1d_0    conda-forge
icu                       68.2                 h9c3ff4c_0    conda-forge
idna                      3.3                pyhd8ed1ab_0    conda-forge
importlib-metadata        4.11.2          py310hff52083_0    conda-forge
importlib_metadata        4.11.2               hd8ed1ab_0    conda-forge
importlib_resources       5.4.0              pyhd8ed1ab_0    conda-forge
ipykernel                 6.9.1           py310hfdc917e_0    conda-forge
ipyparallel               8.2.0              pyhd8ed1ab_0    conda-forge
ipython                   8.0.1           py310hff52083_2    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
jbig                      2.1               h7f98852_2003    conda-forge
jedi                      0.18.1          py310hff52083_0    conda-forge
jeepney                   0.7.1              pyhd8ed1ab_0    conda-forge
jinja2                    3.0.3              pyhd8ed1ab_0    conda-forge
jpeg                      9e                   h7f98852_0    conda-forge
jsonschema                4.4.0              pyhd8ed1ab_0    conda-forge
jupyter_client            7.1.2              pyhd8ed1ab_0    conda-forge
jupyter_core              4.9.2           py310hff52083_0    conda-forge
jupyterlab_pygments       0.1.2              pyh9f0ad1d_0    conda-forge
kernel-headers_linux-64   3.10.0              h4a8ded7_13    conda-forge
keyring                   23.4.0          py310hff52083_2    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.19.2               h3790be6_4    conda-forge
lcms2                     2.12                 hddcbb42_0    conda-forge
ld_impl_linux-64          2.36.1               hea4e1c9_2    conda-forge
lerc                      3.0                  h9c3ff4c_0    conda-forge
libblas                   3.9.0           13_linux64_openblas    conda-forge
libcblas                  3.9.0           13_linux64_openblas    conda-forge
libcurl                   7.81.0               h2574ce0_0    conda-forge
libcxx                    12.0.1               h4bd325d_1    conda-forge
libcxxabi                 12.0.1               ha770c72_1    conda-forge
libdeflate                1.10                 h7f98852_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-devel_linux-64     9.4.0               hd854feb_13    conda-forge
libgcc-ng                 11.2.0              h1d223b6_13    conda-forge
libgd                     2.3.3                h6ad9fb6_0    conda-forge
libgfortran-ng            11.2.0              h69a702a_13    conda-forge
libgfortran5              11.2.0              h5c6108e_13    conda-forge
libglib                   2.70.2               h174f98d_4    conda-forge
libglu                    9.0.0             he1b5a44_1001    conda-forge
libgomp                   11.2.0              h1d223b6_13    conda-forge
libiconv                  1.16                 h516909a_0    conda-forge
liblapack                 3.9.0           13_linux64_openblas    conda-forge
libllvm11                 11.1.0               hf817b99_3    conda-forge
libllvm9                  9.0.1           default_hc23dcda_7    conda-forge
libnghttp2                1.47.0               h727a467_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libopenblas               0.3.18          pthreads_h8fe5266_0    conda-forge
libpng                    1.6.37               h21135ba_2    conda-forge
librsvg                   2.52.5               hc3c00ef_1    conda-forge
libsanitizer              9.4.0               h79bfe98_13    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libssh2                   1.10.0               ha56f1ee_2    conda-forge
libstdcxx-devel_linux-64  9.4.0               hd854feb_13    conda-forge
libstdcxx-ng              11.2.0              he4da1e4_13    conda-forge
libtiff                   4.3.0                h542a066_3    conda-forge
libtool                   2.4.6             h9c3ff4c_1008    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libuv                     1.43.0               h7f98852_0    conda-forge
libwebp                   1.2.2                h3452ae3_0    conda-forge
libwebp-base              1.2.2                h7f98852_1    conda-forge
libxcb                    1.13              h7f98852_1004    conda-forge
libxml2                   2.9.12               h72842e0_0    conda-forge
libzlib                   1.2.11            h36c2ea0_1013    conda-forge
llvmlite                  0.38.0          py310hee97dad_0    conda-forge
lockfile                  0.12.2                     py_1    conda-forge
lz4-c                     1.9.3                h9c3ff4c_1    conda-forge
markupsafe                2.1.0           py310h5764c6d_0    conda-forge
matplotlib-inline         0.1.3              pyhd8ed1ab_0    conda-forge
metakernel                0.28.2             pyhd8ed1ab_0    conda-forge
mistune                   0.8.4           py310h6acc77f_1005    conda-forge
msgpack-python            1.0.3           py310h91b1402_0    conda-forge
mypy_extensions           0.4.3           py310hff52083_4    conda-forge
nbclient                  0.5.11             pyhd8ed1ab_0    conda-forge
nbconvert                 6.4.2           py310hff52083_0    conda-forge
nbformat                  5.1.3              pyhd8ed1ab_0    conda-forge
ncurses                   6.3                  h9c3ff4c_0    conda-forge
nest-asyncio              1.5.4              pyhd8ed1ab_0    conda-forge
nlohmann_json             3.10.5               h9c3ff4c_0    conda-forge
notebook                  6.4.8              pyha770c72_0    conda-forge
numba                     0.55.1          py310hc55943c_0    conda-forge
numpy                     1.21.5          py310h647a097_0    conda-forge
openjdk                   11.0.9.1             h5cc2fde_1    conda-forge
openssl                   1.1.1l               h7f98852_0    conda-forge
packaging                 20.9               pyh44b312d_0    conda-forge
pandoc                    2.17.1.1             ha770c72_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
pango                     1.48.10              hb8ff022_1    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
pastel                    0.2.1              pyhd8ed1ab_0    conda-forge
pathspec                  0.9.0              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 h9c3ff4c_0    conda-forge
pcre2                     10.37                h032f7d1_0    conda-forge
perl                      5.32.1          2_h7f98852_perl5    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pip                       22.0.3             pyhd8ed1ab_0    conda-forge
pixman                    0.40.0               h36c2ea0_0    conda-forge
pkginfo                   1.8.2              pyhd8ed1ab_0    conda-forge
platformdirs              2.5.1              pyhd8ed1ab_0    conda-forge
poetry                    1.1.13          py310hff52083_0    conda-forge
poetry-core               1.0.8           py310hff52083_0    conda-forge
portalocker               2.4.0           py310hff52083_0    conda-forge
prometheus_client         0.13.1             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.27             pyha770c72_0    conda-forge
psutil                    5.9.0           py310h6acc77f_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pygments                  2.11.2             pyhd8ed1ab_0    conda-forge
pylev                     1.4.0              pyhd8ed1ab_0    conda-forge
pyopenssl                 22.0.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.0.7              pyhd8ed1ab_0    conda-forge
pyrsistent                0.18.1          py310h6acc77f_0    conda-forge
pysocks                   1.7.1           py310hff52083_4    conda-forge
pythia8                   8.8             py310h122e73d_0    conda-forge
python                    3.10.2          h85951f9_3_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python_abi                3.10                    2_cp310    conda-forge
pyyaml                    6.0                      pypi_0    pypi
pyzmq                     22.3.0          py310h675a958_1    conda-forge
readline                  8.1                  h46c0cb4_0    conda-forge
requests                  2.27.1             pyhd8ed1ab_0    conda-forge
requests-toolbelt         0.9.1                      py_0    conda-forge
rhash                     1.4.1                h7f98852_0    conda-forge
root                      6.24.6          py310hb5077e9_2    conda-forge
root_base                 6.24.6          py310h57d1b7e_2    conda-forge
scitokens-cpp             0.6.3                h00015f2_2    conda-forge
secretstorage             3.3.1           py310hff52083_1    conda-forge
send2trash                1.8.0              pyhd8ed1ab_0    conda-forge
setuptools                60.9.3          py310hff52083_0    conda-forge
shellingham               1.4.0              pyh44b312d_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sqlite                    3.37.0               h9cd32fc_0    conda-forge
stack_data                0.2.0              pyhd8ed1ab_0    conda-forge
sysroot_linux-64          2.17                h4a8ded7_13    conda-forge
tbb                       2021.5.0             h4bd325d_0    conda-forge
terminado                 0.13.1          py310hff52083_0    conda-forge
testpath                  0.6.0              pyhd8ed1ab_0    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tomlkit                   0.10.0             pyha770c72_0    conda-forge
tornado                   6.1             py310h6acc77f_2    conda-forge
tqdm                      4.63.0             pyhd8ed1ab_0    conda-forge
traitlets                 5.1.1              pyhd8ed1ab_0    conda-forge
typed-ast                 1.5.2           py310h6acc77f_0    conda-forge
typing                    3.10.0.0           pyhd8ed1ab_0    conda-forge
typing_extensions         4.1.1              pyha770c72_0    conda-forge
tzdata                    2021e                he74cb21_0    conda-forge
urllib3                   1.26.8             pyhd8ed1ab_1    conda-forge
vdt                       0.4.3                h9c3ff4c_0    conda-forge
vector-classes            1.4.2                h4bd325d_1    conda-forge
virtualenv                20.13.2         py310hff52083_0    conda-forge
voms-clients              3.3.2                h3e2b116_1    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
xorg-fixesproto           5.0               h7f98852_1002    conda-forge
xorg-inputproto           2.3.2             h7f98852_1002    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.6.12               h36c2ea0_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxcursor           1.2.0                h516909a_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h516909a_0    conda-forge
xorg-libxfixes            5.0.3             h516909a_1004    conda-forge
xorg-libxft               2.3.4                h8aea5ac_0    conda-forge
xorg-libxi                1.7.10               h516909a_0    conda-forge
xorg-libxpm               3.5.13               h516909a_0    conda-forge
xorg-libxrender           0.9.10            h516909a_1002    conda-forge
xorg-libxt                1.1.5             h516909a_1003    conda-forge
xorg-libxtst              1.2.3             h516909a_1002    conda-forge
xorg-recordproto          1.14.2            h7f98852_1002    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xrootd                    5.4.1           py310hf716355_0    conda-forge
xxhash                    0.8.0                h7f98852_3    conda-forge
xz                        5.2.5                h516909a_1    conda-forge
zeromq                    4.3.4                h9c3ff4c_1    conda-forge
zipp                      3.7.0              pyhd8ed1ab_1    conda-forge
zlib                      1.2.11            h36c2ea0_1013    conda-forge
zstd                      1.5.2                ha95c52a_0    conda-forge

Environment info

clip-login-1mrtools-root624-py310groupshephy…envsmrtools-conda-me conda info

     active environment : mrtools-root624-py310
    active env location : /groups/hephy/cms/dietrich.liko/conda/envs/mrtools-root624-py310
            shell level : 1
       user config file : /users/dietrich.liko/.condarc
 populated config files : /users/dietrich.liko/.condarc
          conda version : 4.10.3
    conda-build version : 3.18.9
         python version : 3.7.4.final.0
       virtual packages : __linux=3.10.0=0
                          __glibc=2.17=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /software/2020/software/anaconda3/2019.10  (read only)
      conda av data dir : /software/2020/software/anaconda3/2019.10/etc/conda
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /groups/hephy/cms/dietrich.liko/conda/pkgs
       envs directories : /groups/hephy/cms/dietrich.liko/conda/envs
                          /users/dietrich.liko/.conda/envs
                          /software/2020/software/anaconda3/2019.10/envs
               platform : linux-64
             user-agent : conda/4.10.3 requests/2.22.0 CPython/3.7.4 Linux/3.10.0-1160.45.1.el7.x86_64 centos/7.9.2009 glibc/2.17
                UID:GID : 58879:11788
             netrc file : None
           offline mode : False
chrisburr commented 2 years ago

If you can make a PR to fix this I'm happy to merge it.

Personally I'm using the voms package which might be an alternative for you.

dietrichliko commented 2 years ago

Hi Chris!

Thanks for the hint with the voms package. I did not know about the voms package and it works fine for me.

Unluckily I am not familiar enough with feedstock system and building of conda packages, so a meaningful PR would be quite difficult for me ...

Thanks, feel free to close the issue.

chrisburr commented 2 years ago

I'll leave it open as it's a valid issue. (Thanks for the clear explanation by the way!)

Maybe I'll find time to fix it at some point 😃