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Hardcoded path from RDonnelly's machine in when using x86_64-conda_cos6-linux-gnu-c++ #3241

Open matt-chan opened 6 years ago

matt-chan commented 6 years ago

Actual Behavior

When linking under some conditions, libtools looks for libstdc++.la in rdonnelly's machine. 

/bin/sh   ../libtool --quiet --mode=link --tag=CXX      x86_64-conda_cos6-linux-gnu-c++ -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,-rpath,<PREFIX>/lib -L<PREFIX>/lib -L../lib -lint2 -lm   -o eri/test eri/test.o
libtool:   error: cannot find the library '/home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/gcc_built/x86_64-conda_cos6-linux-gnu/lib/../lib/libstdc++.la' or unhandled argument '/home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/gcc_built/x86_64-conda_cos6-linux-gnu/lib/../lib/libstdc++.la'

If it helps, here's a successful libtool call from the same project, which also uses libstdc++

/bin/sh   ./libtool --quiet --mode=link --tag=CXX      x86_64-conda_cos6-linux-gnu-c++ -o lib/libint2.la -objectlist libobjlist -rpath <PREFIX>/lib -version-info 2:2:0

Expected Behavior

Libtool should link to the libstdc++ in the current build_env or prefix.

Steps to Reproduce

conda build on recipe at https://github.com/QuantumElephant/libint-recipe/tree/2.3.1. Prepare to wait for a long build...

Output of conda info
     active environment : None
       user config file : /home/mattchan/.condarc
 populated config files : /home/mattchan/.condarc
          conda version : 4.5.11
    conda-build version : 3.16.2
         python version : 2.7.15.final.0
       base environment : /home/mattchan/miniconda2  (writable)
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/free/linux-64
                          https://repo.anaconda.com/pkgs/free/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
                          https://repo.anaconda.com/pkgs/pro/linux-64
                          https://repo.anaconda.com/pkgs/pro/noarch
                          https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /home/mattchan/miniconda2/pkgs
                          /home/mattchan/.conda/pkgs
       envs directories : /home/mattchan/miniconda2/envs
                          /home/mattchan/.conda/envs
               platform : linux-64
             user-agent : conda/4.5.11 requests/2.18.4 CPython/2.7.15 Linux/3.10.0-862.14.4.el7.x86_64 rhel/7.5 glibc/2.17
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False
smith01s commented 6 years ago

I have the same.

` (rstudio) smith01s@F0011:~/temp/sodium_1.1/sodium$ gcc -xc -E -v - Reading specs from /home/FDSL/smith01s/miniconda3/envs/rstudio/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/specs COLLECT_GCC=gcc Target: x86_64-conda_cos6-linux-gnu Configured with: /home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/.build/x86_64-conda_cos6-linux-gnu/src/gcc/configure --build=x86_64-build_pc-linux-gnu --host=x86_64-build_pc-linux-gnu --target=x86_64-conda_cos6-linux-gnu --prefix=/home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/gcc_built --with-sysroot=/home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/gcc_built/x86_64-conda_cos6-linux-gnu/sysroot --enable-languages=c,c++,fortran,objc,obj-c++ --with-pkgversion='crosstool-NG 1.23.0.449-a04d0' --enable-__cxa_atexit --disable-libmudflap --enable-libgomp --disable-libssp --enable-libquadmath --enable-libquadmath-support --enable-libsanitizer --enable-libmpx --with-gmp=/home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/.build/x86_64-conda_cos6-linux-gnu/buildtools --with-mpfr=/home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/.build/x86_64-conda_cos6-linux-gnu/buildtools --with-mpc=/home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/.build/x86_64-conda_cos6-linux-gnu/buildtools --with-isl=/home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/.build/x86_64-conda_cos6-linux-gnu/buildtools --enable-lto --enable-threads=posix --enable-target-optspace --enable-plugin --enable-gold --disable-nls --disable-multilib --with-local-prefix=/home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/gcc_built/x86_64-conda_cos6-linux-gnu/sysroot --enable-long-long --enable-default-pie Thread model: posix gcc version 7.3.0 (crosstool-NG 1.23.0.449-a04d0) COLLECT_GCC_OPTIONS='-E' '-v' '-mtune=generic' '-march=x86-64' /home/FDSL/smith01s/miniconda3/envs/rstudio/bin/../libexec/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/cc1 -E -quiet -v -iprefix /home/FDSL/smith01s/miniconda3/envs/rstudio/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/ -isysroot /home/FDSL/smith01s/miniconda3/envs/rstudio/bin/../x86_64-conda_cos6-linux-gnu/sysroot - -mtune=generic -march=x86-64 ignoring duplicate directory "/home/FDSL/smith01s/miniconda3/envs/rstudio/bin/../lib/gcc/../../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/include" ignoring nonexistent directory "/home/FDSL/smith01s/miniconda3/envs/rstudio/bin/../x86_64-conda_cos6-linux-gnu/sysroot/home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/gcc_built/x86_64-conda_cos6-linux-gnu/sysroot/include" ignoring duplicate directory "/home/FDSL/smith01s/miniconda3/envs/rstudio/bin/../lib/gcc/../../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/include-fixed" ignoring duplicate directory "/home/FDSL/smith01s/miniconda3/envs/rstudio/bin/../lib/gcc/../../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/include"

include "..." search starts here:

include <...> search starts here:

/home/FDSL/smith01s/miniconda3/envs/rstudio/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/include /home/FDSL/smith01s/miniconda3/envs/rstudio/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/include-fixed /home/FDSL/smith01s/miniconda3/envs/rstudio/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/include /home/FDSL/smith01s/miniconda3/envs/rstudio/bin/../x86_64-conda_cos6-linux-gnu/sysroot/usr/include End of search list. `

mingwandroid commented 6 years ago

Sorry this has taken a while. I'll get round to it when I can. Really we don't want to be using libtool for libstdc++, in fact some distros remove all .la files from all packages.

Is libtool something you want to run by choice (on .la files as opposed to raw libraries) or is it happening due to some build system?

Can you try deleting these .la files and seeing if your builds work without them?

matt-chan commented 6 years ago

No problem about the delay. Yeah, I was going to say that it's quite common to kill off libtool archives when packaging for distros. We do it automatically in the Fedora/RHEL build scripts.

It's not my choice to run with .la files. The project author deliberately compiled with them. He seems to be making even more use of libtool as time goes on...

My temporary workaround was to do the linkages before moving to the run prefix. So I run the tests before calling make install. Not optimal, but it tests for some components at least.

I have a feeling that it's not stable though. The libtool archives (and their hardcoded paths) will make their way downstream into other projects that link against it.

adityabandla commented 5 years ago

Any solution to this yet?

ryanskeith commented 2 years ago

I think this is no longer an issue.