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cc1 and subsequent build errors #4851

Open Rridley7 opened 1 year ago

Rridley7 commented 1 year ago

Checklist

What happened?

Hello, I have run into a recurrent set of errors when looking to compile packages using x86_64-conda-linux-gnu-cc. The current program I was looking to install was arrow in R. The installation commands: Sys.setenv(ARROW_R_DEV = TRUE) install.packages("arrow")

The first error I get when looking to install a package is: 

CMake Error at /tmp/Rtmp1zl0X5/file3db7babde7d8/cmake-3.21.4-linux-x86_64/share/cmake-3.21/Modules/CMakeTestCCompiler.cmake:69 (message):
  The C compiler

    "/storage/home/hcoda1/6/rridley3/data/dir/anaconda3/envs/R-env/bin/x86_64-conda-linux-gnu-cc"

  is not able to compile a simple test program.

  It fails with the following output:

    Change Dir: /tmp/Rtmp1zl0X5/file3db7b61242f8a/CMakeFiles/CMakeTmp

    Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_2b9ac/fast && make  -f CMakeFiles/cmTC_2b9ac.dir/build.make CMakeFiles/cmTC_2b9ac.dir/build
    make[1]: Entering directory '/tmp/Rtmp1zl0X5/file3db7b61242f8a/CMakeFiles/CMakeTmp'
    Building C object CMakeFiles/cmTC_2b9ac.dir/testCCompiler.c.o
    /storage/home/hcoda1/6/rridley3/data/dir/anaconda3/envs/R-env/bin/x86_64-conda-linux-gnu-cc    -o CMakeFiles/cmTC_2b9ac.dir/testCCompiler.c.o -c /tmp/Rtmp1zl0X5/file3db7b61242f8a/CMakeFiles/CMakeTmp/testCCompiler.c
    x86_64-conda-linux-gnu-cc: fatal error: cannot execute 'cc1': execvp: Permission denied
    compilation terminated.
    make[1]: *** [CMakeFiles/cmTC_2b9ac.dir/build.make:78: CMakeFiles/cmTC_2b9ac.dir/testCCompiler.c.o] Error 1
    make[1]: Leaving directory '/tmp/Rtmp1zl0X5/file3db7b61242f8a/CMakeFiles/CMakeTmp'
    gmake: *** [cmTC_2b9ac/fast] Error 2

Noting that cc1 is unable to be found. When I search for cc1 in the conda environment directory, it exists:

find ./ -name 'cc1*'
#./libexec/gcc/x86_64-conda-linux-gnu/12.2.0/cc1objplus
#./libexec/gcc/x86_64-conda-linux-gnu/12.2.0/cc1plus
#./libexec/gcc/x86_64-conda-linux-gnu/12.2.0/cc1obj
#./libexec/gcc/x86_64-conda-linux-gnu/12.2.0/cc1

I then may symlink these into the bin for the environment, this then fails with: 

It fails with the following output:

    Change Dir: /tmp/Rtmp2GzoI0/file7adb423e4806/CMakeFiles/CMakeTmp

    Run Build Command(s):/usr/bin/gmake -f Makefile cmTC_64b3b/fast && make  -f CMakeFiles/cmTC_64b3b.dir/build.make CMakeFiles/cmTC_64b3b.dir/build
    make[1]: Entering directory '/tmp/Rtmp2GzoI0/file7adb423e4806/CMakeFiles/CMakeTmp'
    Building C object CMakeFiles/cmTC_64b3b.dir/testCCompiler.c.o
    /storage/home/hcoda1/6/rridley3/data/dir/anaconda3/envs/R-env/bin/x86_64-conda-linux-gnu-cc    -o CMakeFiles/cmTC_64b3b.dir/testCCompiler.c.o -c /tmp/Rtmp2GzoI0/file7adb423e4806/CMakeFiles/CMakeTmp/testCCompiler.c
    Linking C executable cmTC_64b3b
    /tmp/Rtmp2GzoI0/file7adb27d5f4d5/cmake-3.21.4-linux-x86_64/bin/cmake -E cmake_link_script CMakeFiles/cmTC_64b3b.dir/link.txt --verbose=1
    /storage/home/hcoda1/6/rridley3/data/dir/anaconda3/envs/R-env/bin/x86_64-conda-linux-gnu-cc -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/storage/home/hcoda1/6/rridley3/data/dir/anaconda3/envs/R-env/lib -Wl,-rpath-link,/storage/home/hcoda1/6/rridley3/data/dir/anaconda3/envs/R-env/lib -L/storage/home/hcoda1/6/rridley3/data/dir/anaconda3/envs/R-env/lib  CMakeFiles/cmTC_64b3b.dir/testCCompiler.c.o -o cmTC_64b3b
    x86_64-conda-linux-gnu-cc: fatal error: '-fuse-linker-plugin', but liblto_plugin.so not found
    compilation terminated.
    make[1]: *** [CMakeFiles/cmTC_64b3b.dir/build.make:99: cmTC_64b3b] Error 1
    make[1]: Leaving directory '/tmp/Rtmp2GzoI0/file7adb423e4806/CMakeFiles/CMakeTmp'
    gmake: *** [cmTC_64b3b/fast] Error 2

  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  CMakeLists.txt:71 (project)

I have tried to symlink this file liblto_plugin.so into the bin also, however the same error occurs. I have had this same issue across multiple different program compilations, not just that shown above, so this issue is not unique to R or arrow. Are there any stable fixes for this issue?

Conda Info

active environment : R-env
    active env location : /storage/home/hcoda1/6/rridley3/data/dir/anaconda3/envs/R-env
            shell level : 2
       user config file : /storage/home/hcoda1/6/rridley3/.condarc
 populated config files : /storage/coda1/p-ktk3/0/rridley3/dir/mambaforge/.condarc
                          /storage/home/hcoda1/6/rridley3/.condarc
          conda version : 22.11.1
    conda-build version : not installed
         python version : 3.10.8.final.0
       virtual packages : __archspec=1=x86_64
                          __glibc=2.17=0
                          __linux=3.10.0=0
                          __unix=0=0
       base environment : /storage/coda1/p-ktk3/0/rridley3/dir/mambaforge  (writable)
      conda av data dir : /storage/coda1/p-ktk3/0/rridley3/dir/mambaforge/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /storage/coda1/p-ktk3/0/rridley3/dir/mambaforge/pkgs
                          /storage/home/hcoda1/6/rridley3/.conda/pkgs
       envs directories : /storage/home/hcoda1/6/rridley3/data/dir/anaconda3/envs
                          /storage/coda1/p-ktk3/0/rridley3/dir/mambaforge/envs
                          /storage/home/hcoda1/6/rridley3/.conda/envs
               platform : linux-64
             user-agent : conda/22.11.1 requests/2.28.1 CPython/3.10.8 Linux/3.10.0-1160.49.1.el7.x86_64 rhel/7.9 glibc/2.17
                UID:GID : 3011406:450347
             netrc file : None
           offline mode : False

Conda Config

==> /storage/coda1/p-ktk3/0/rridley3/dir/mambaforge/.condarc <==
channels:
  - conda-forge

==> /storage/home/hcoda1/6/rridley3/.condarc <==
env_prompt: ({name})
envs_dirs:
  - /storage/home/hcoda1/6/rridley3/data/dir/anaconda3/envs
channels:
  - conda-forge
  - bioconda
  - defaults

Conda list

# packages in environment at /storage/home/hcoda1/6/rridley3/data/dir/anaconda3/envs/R-env:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
_r-mutex                  1.0.1               anacondar_1    conda-forge
argcomplete               2.0.0              pyhd8ed1ab_0    conda-forge
binutils_impl_linux-64    2.40                 hf600244_0    conda-forge
bioconductor-aldex2       1.30.0            r42hdfd78af_0    bioconda
bioconductor-biobase      2.58.0            r42hc0cfd56_0    bioconda
bioconductor-biocgenerics 0.44.0            r42hdfd78af_0    bioconda
bioconductor-biocparallel 1.32.5            r42hc247a5b_0    bioconda
bioconductor-data-packages 20230202             hdfd78af_0    bioconda
bioconductor-delayedarray 0.24.0            r42hc0cfd56_0    bioconda
bioconductor-genomeinfodb 1.34.8            r42hdfd78af_0    bioconda
bioconductor-genomeinfodbdata 1.2.9             r42hdfd78af_0    bioconda
bioconductor-genomicranges 1.50.0            r42hc0cfd56_0    bioconda
bioconductor-iranges      2.32.0            r42hc0cfd56_0    bioconda
bioconductor-matrixgenerics 1.10.0            r42hdfd78af_0    bioconda
bioconductor-multtest     2.54.0            r42hc0cfd56_0    bioconda
bioconductor-s4vectors    0.36.0            r42hc0cfd56_0    bioconda
bioconductor-summarizedexperiment 1.28.0            r42hdfd78af_0    bioconda
bioconductor-xvector      0.38.0            r42hc0cfd56_0    bioconda
bioconductor-zlibbioc     1.44.0            r42hc0cfd56_0    bioconda
bwidget                   1.9.14               ha770c72_1    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
ca-certificates           2022.12.7            ha878542_0    conda-forge
cairo                     1.16.0            ha61ee94_1014    conda-forge
curl                      7.88.1               hdc1c0ab_0    conda-forge
expat                     2.5.0                h27087fc_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.2               h14ed4e7_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
freetype                  2.12.1               hca18f0e_1    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
gcc_impl_linux-64         12.2.0              hcc96c02_19    conda-forge
gettext                   0.21.1               h27087fc_0    conda-forge
gfortran_impl_linux-64    12.2.0              h55be85b_19    conda-forge
graphite2                 1.3.13            h58526e2_1001    conda-forge
gsl                       2.7                  he838d99_0    conda-forge
gxx_impl_linux-64         12.2.0              hcc96c02_19    conda-forge
harfbuzz                  6.0.0                h8e241bc_0    conda-forge
icu                       70.1                 h27087fc_0    conda-forge
importlib-metadata        4.13.0             pyha770c72_0    conda-forge
importlib_metadata        4.13.0               hd8ed1ab_0    conda-forge
jpeg                      9e                   h0b41bf4_3    conda-forge
jq                        1.6               h36c2ea0_1000    conda-forge
kernel-headers_linux-64   2.6.32              he073ed8_15    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.20.1               h81ceb04_0    conda-forge
ld_impl_linux-64          2.40                 h41732ed_0    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libblas                   3.9.0           16_linux64_openblas    conda-forge
libcblas                  3.9.0           16_linux64_openblas    conda-forge
libcurl                   7.88.1               hdc1c0ab_0    conda-forge
libdeflate                1.17                 h0b41bf4_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc                    7.2.0                h69d50b8_2    conda-forge
libgcc-devel_linux-64     12.2.0              h3b97bd3_19    conda-forge
libgcc-ng                 12.2.0              h65d4601_19    conda-forge
libgfortran-ng            12.2.0              h69a702a_19    conda-forge
libgfortran5              12.2.0              h337968e_19    conda-forge
libglib                   2.74.1               h606061b_1    conda-forge
libgomp                   12.2.0              h65d4601_19    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
liblapack                 3.9.0           16_linux64_openblas    conda-forge
libnghttp2                1.52.0               h61bc06f_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libopenblas               0.3.21          pthreads_h78a6416_3    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
libsanitizer              12.2.0              h46fd767_19    conda-forge
libsqlite                 3.40.0               h753d276_0    conda-forge
libssh2                   1.10.0               hf14f497_3    conda-forge
libstdcxx-devel_linux-64  12.2.0              h3b97bd3_19    conda-forge
libstdcxx-ng              12.2.0              h46fd767_19    conda-forge
libtiff                   4.5.0                h6adf6a1_2    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libwebp-base              1.2.4                h166bdaf_0    conda-forge
libxcb                    1.13              h7f98852_1004    conda-forge
libxml2                   2.10.3               h7463322_0    conda-forge
libzlib                   1.2.13               h166bdaf_4    conda-forge
make                      4.3                  hd18ef5c_1    conda-forge
ncurses                   6.3                  h27087fc_1    conda-forge
oniguruma                 6.9.8                h166bdaf_0    conda-forge
openssl                   3.1.0                h0b41bf4_0    conda-forge
pandoc                    2.19.2               h32600fe_1    conda-forge
pango                     1.50.14              hd33c08f_0    conda-forge
pcre2                     10.40                hc3806b6_0    conda-forge
pip                       23.0.1             pyhd8ed1ab_0    conda-forge
pixman                    0.40.0               h36c2ea0_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
python                    3.11.0          he550d4f_1_cpython    conda-forge
python_abi                3.11                    3_cp311    conda-forge
pyyaml                    6.0             py311hd4cff14_5    conda-forge
r-askpass                 1.1               r42h06615bd_3    conda-forge
r-assertthat              0.2.1             r42hc72bb7e_3    conda-forge
r-backports               1.4.1             r42h06615bd_1    conda-forge
r-base                    4.2.3                ha7d60f8_0    conda-forge
r-base64enc               0.1_3           r42h06615bd_1005    conda-forge
r-bh                      1.81.0_1          r42hc72bb7e_0    conda-forge
r-bit                     4.0.5             r42h06615bd_0    conda-forge
r-bit64                   4.0.5             r42h06615bd_1    conda-forge
r-bitops                  1.0_7             r42h06615bd_1    conda-forge
r-blob                    1.2.3             r42hc72bb7e_1    conda-forge
r-broom                   1.0.3             r42hc72bb7e_0    conda-forge
r-bslib                   0.4.2             r42hc72bb7e_0    conda-forge
r-cachem                  1.0.7             r42h133d619_0    conda-forge
r-callr                   3.7.3             r42hc72bb7e_0    conda-forge
r-cellranger              1.1.0           r42hc72bb7e_1005    conda-forge
r-cli                     3.6.0             r42h38f115c_0    conda-forge
r-clipr                   0.8.0             r42hc72bb7e_1    conda-forge
r-codetools               0.2_19            r42hc72bb7e_0    conda-forge
r-colorspace              2.1_0             r42h133d619_0    conda-forge
r-conflicted              1.2.0             r42h785f33e_0    conda-forge
r-cpp11                   0.4.3             r42hc72bb7e_0    conda-forge
r-crayon                  1.5.2             r42hc72bb7e_1    conda-forge
r-curl                    4.3.3             r42h06615bd_1    conda-forge
r-data.table              1.14.8            r42h133d619_0    conda-forge
r-dbi                     1.1.3             r42hc72bb7e_1    conda-forge
r-dbplyr                  2.3.1             r42hc72bb7e_0    conda-forge
r-digest                  0.6.31            r42h38f115c_0    conda-forge
r-dplyr                   1.1.0             r42h38f115c_0    conda-forge
r-dtplyr                  1.3.0             r42hc72bb7e_0    conda-forge
r-ellipsis                0.3.2             r42h06615bd_1    conda-forge
r-evaluate                0.20              r42hc72bb7e_0    conda-forge
r-fansi                   1.0.4             r42h133d619_0    conda-forge
r-farver                  2.1.1             r42h7525677_1    conda-forge
r-fastmap                 1.1.1             r42h38f115c_0    conda-forge
r-forcats                 1.0.0             r42hc72bb7e_0    conda-forge
r-formatr                 1.14              r42hc72bb7e_0    conda-forge
r-fs                      1.6.1             r42h38f115c_0    conda-forge
r-futile.logger           1.4.3           r42hc72bb7e_1004    conda-forge
r-futile.options          1.0.1           r42hc72bb7e_1003    conda-forge
r-gargle                  1.3.0             r42h785f33e_0    conda-forge
r-generics                0.1.3             r42hc72bb7e_1    conda-forge
r-ggplot2                 3.4.1             r42hc72bb7e_0    conda-forge
r-glue                    1.6.2             r42h06615bd_1    conda-forge
r-googledrive             2.0.0             r42hc72bb7e_1    conda-forge
r-googlesheets4           1.0.1             r42h785f33e_1    conda-forge
r-gtable                  0.3.1             r42hc72bb7e_1    conda-forge
r-haven                   2.5.2             r42h38f115c_0    conda-forge
r-highr                   0.10              r42hc72bb7e_0    conda-forge
r-hms                     1.1.2             r42hc72bb7e_1    conda-forge
r-htmltools               0.5.4             r42h38f115c_0    conda-forge
r-httr                    1.4.5             r42hc72bb7e_0    conda-forge
r-ids                     1.0.1             r42hc72bb7e_2    conda-forge
r-isoband                 0.2.7             r42h38f115c_1    conda-forge
r-jquerylib               0.1.4             r42hc72bb7e_1    conda-forge
r-jsonlite                1.8.4             r42h133d619_0    conda-forge
r-knitr                   1.42              r42hc72bb7e_1    conda-forge
r-labeling                0.4.2             r42hc72bb7e_2    conda-forge
r-lambda.r                1.2.4             r42hc72bb7e_2    conda-forge
r-lattice                 0.20_45           r42h06615bd_1    conda-forge
r-lifecycle               1.0.3             r42hc72bb7e_1    conda-forge
r-lubridate               1.9.2             r42h133d619_1    conda-forge
r-magrittr                2.0.3             r42h06615bd_1    conda-forge
r-mass                    7.3_58.2          r42h133d619_0    conda-forge
r-matrix                  1.5_3             r42h5f7b363_0    conda-forge
r-matrixstats             0.63.0            r42h06615bd_0    conda-forge
r-memoise                 2.0.1             r42hc72bb7e_1    conda-forge
r-mgcv                    1.8_42            r42he1ae0d6_0    conda-forge
r-mime                    0.12              r42h06615bd_1    conda-forge
r-modelr                  0.1.10            r42hc72bb7e_0    conda-forge
r-munsell                 0.5.0           r42hc72bb7e_1005    conda-forge
r-nada                    1.6_1.1           r42hc72bb7e_2    conda-forge
r-nlme                    3.1_162           r42hac0b197_0    conda-forge
r-openssl                 2.0.5             r42habfbb5e_0    conda-forge
r-pillar                  1.8.1             r42hc72bb7e_1    conda-forge
r-pkgconfig               2.0.3             r42hc72bb7e_2    conda-forge
r-prettyunits             1.1.1             r42hc72bb7e_2    conda-forge
r-processx                3.8.0             r42h06615bd_0    conda-forge
r-progress                1.2.2             r42hc72bb7e_3    conda-forge
r-ps                      1.7.2             r42h06615bd_0    conda-forge
r-purrr                   1.0.1             r42h133d619_0    conda-forge
r-r6                      2.5.1             r42hc72bb7e_1    conda-forge
r-ragg                    1.2.5             r42hd65d3ba_0    conda-forge
r-rappdirs                0.3.3             r42h06615bd_1    conda-forge
r-rcolorbrewer            1.1_3             r42h785f33e_1    conda-forge
r-rcpp                    1.0.10            r42h38f115c_0    conda-forge
r-rcpparmadillo           0.11.4.4.0        r42h358215d_0    conda-forge
r-rcppgsl                 0.3.13            r42hbf9dc1e_0    conda-forge
r-rcppziggurat            0.1.6             r42h37cf8d7_2    conda-forge
r-rcurl                   1.98_1.10         r42h133d619_0    conda-forge
r-readr                   2.1.4             r42h38f115c_0    conda-forge
r-readxl                  1.4.2             r42h81ef4d7_0    conda-forge
r-rematch                 1.0.1           r42hc72bb7e_1005    conda-forge
r-rematch2                2.1.2             r42hc72bb7e_2    conda-forge
r-reprex                  2.0.2             r42hc72bb7e_1    conda-forge
r-rfast                   2.0.7             r42h358215d_0    conda-forge
r-rlang                   1.0.6             r42h7525677_1    conda-forge
r-rmarkdown               2.20              r42hc72bb7e_0    conda-forge
r-rstudioapi              0.14              r42hc72bb7e_1    conda-forge
r-rvest                   1.0.3             r42hc72bb7e_1    conda-forge
r-sass                    0.4.5             r42h38f115c_0    conda-forge
r-scales                  1.2.1             r42hc72bb7e_1    conda-forge
r-selectr                 0.4_2             r42hc72bb7e_2    conda-forge
r-snow                    0.4_4             r42hc72bb7e_1    conda-forge
r-stringi                 1.7.12            r42h1ae9187_0    conda-forge
r-stringr                 1.5.0             r42h785f33e_0    conda-forge
r-survival                3.5_3             r42h133d619_0    conda-forge
r-sys                     3.4.1             r42h06615bd_0    conda-forge
r-systemfonts             1.0.4             r42h0ff29ef_1    conda-forge
r-textshaping             0.3.6             r42hbb20487_4    conda-forge
r-tibble                  3.1.8             r42h06615bd_1    conda-forge
r-tidyr                   1.3.0             r42h38f115c_0    conda-forge
r-tidyselect              1.2.0             r42hc72bb7e_0    conda-forge
r-tidyverse               2.0.0             r42h785f33e_0    conda-forge
r-timechange              0.2.0             r42h38f115c_0    conda-forge
r-tinytex                 0.44              r42hc72bb7e_0    conda-forge
r-truncnorm               1.0_8           r42h06615bd_1003    conda-forge
r-tzdb                    0.3.0             r42h7525677_1    conda-forge
r-utf8                    1.2.3             r42h133d619_0    conda-forge
r-uuid                    1.1_0             r42h06615bd_1    conda-forge
r-vctrs                   0.5.2             r42h38f115c_0    conda-forge
r-viridislite             0.4.1             r42hc72bb7e_1    conda-forge
r-vroom                   1.6.1             r42h38f115c_0    conda-forge
r-withr                   2.5.0             r42hc72bb7e_1    conda-forge
r-xfun                    0.37              r42h38f115c_0    conda-forge
r-xml2                    1.3.3             r42h044e5c7_2    conda-forge
r-yaml                    2.3.7             r42h133d619_0    conda-forge
r-zcompositions           1.4.0_1           r42hc72bb7e_1    conda-forge
readline                  8.1.2                h0f457ee_0    conda-forge
sed                       4.8                  he412f7d_0    conda-forge
setuptools                67.4.0             pyhd8ed1ab_0    conda-forge
sysroot_linux-64          2.12                he073ed8_15    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
tktable                   2.10                 hb7b940f_3    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tzdata                    2022g                h191b570_0    conda-forge
wheel                     0.38.4             pyhd8ed1ab_0    conda-forge
xmltodict                 0.13.0             pyhd8ed1ab_0    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.8.4                h0b41bf4_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h0b41bf4_2    conda-forge
xorg-libxrender           0.9.10            h7f98852_1003    conda-forge
xorg-libxt                1.2.1                h7f98852_2    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h0b41bf4_1003    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
yq                        3.1.1              pyhd8ed1ab_0    conda-forge
zipp                      3.15.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               h166bdaf_4    conda-forge
zstd                      1.5.2                h3eb15da_6    conda-forge

Additional Context

No response

travishathaway commented 1 year ago

Hi @Rridley7,

Thanks for filing this issue. I do not have answer to this particular problem, but I will keep it open for others to discuss and possibly submit a fix if warranted.

kongdd commented 8 months ago

I have the same issue. Any idea how to solve?

ydottie commented 8 months ago

I have the same issue and also tried the same fixes. Please let me know if you were able to solve it