conda / conda-lock

Lightweight lockfile for conda environments
https://conda.github.io/conda-lock/
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Error-level log messages from root logger for git command output #496

Open rcthomas opened 1 year ago

rcthomas commented 1 year ago

Checklist

What happened?

For the example environment.yml,

name: testing
channels:
  - conda-forge
dependencies:
  - jupyterlab=3.6
  - nodejs
  - py
  - pip:
    - git+https://github.com/NERSC/additional-resources-menu@v1.0.0a

At the end of the conda-lock install --name env2 --mamba conda-lock.yml these error-level messages are printed:

ERROR:root:  Running command git clone --filter=blob:none --quiet https://github.com/NERSC/additional-resources-menu /tmp/pip-install-ax0u1tgh/additional-resources-menu_164ccce1cbb447a0a1f2ed7549497c7a
ERROR:root:  Running command git rev-parse -q --verify 'sha^291c6e853f848cd0ad15519798ccf4c063bad3ef'
ERROR:root:  Running command git fetch -q https://github.com/NERSC/additional-resources-menu 291c6e853f848cd0ad15519798ccf4c063bad3ef
ERROR:root:

I'm guessing these can be ignored because the build looks complete, but why are they being propagated as errors? Thanks!

Conda Info

mamba version : 1.5.0
     active environment : base
    active env location : /pscratch/sd/r/rthomas/bug/env
            shell level : 1
       user config file : /global/homes/r/rthomas/.condarc
 populated config files : /pscratch/sd/r/rthomas/bug/env/.condarc
                          /global/homes/r/rthomas/.condarc
          conda version : 23.1.0
    conda-build version : not installed
         python version : 3.10.12.final.0
       virtual packages : __archspec=1=x86_64
                          __cuda=12.0=0
                          __glibc=2.31=0
                          __linux=5.14.21=0
                          __unix=0=0
       base environment : /pscratch/sd/r/rthomas/bug/env  (writable)
      conda av data dir : /pscratch/sd/r/rthomas/bug/env/etc/conda
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
                          https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /pscratch/sd/r/rthomas/bug/env/pkgs
                          /global/homes/r/rthomas/.conda/pkgs
       envs directories : /pscratch/sd/r/rthomas/bug/env/envs
                          /global/homes/r/rthomas/.conda/envs
               platform : linux-64
             user-agent : conda/23.1.0 requests/2.31.0 CPython/3.10.12 Linux/5.14.21-150400.24.69_12.0.74-cray_shasta_c sles/15.4 glibc/2.31
                UID:GID : 32331:1032331
             netrc file : /global/homes/r/rthomas/.netrc
           offline mode : False

Conda Config

==> /pscratch/sd/r/rthomas/bug/env/.condarc <==
channels:
  - conda-forge

==> /global/homes/r/rthomas/.condarc <==
channels:
  - defaults
show_channel_urls: True

Conda list

# packages in environment at /pscratch/sd/r/rthomas/bug/env:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
annotated-types           0.5.0              pyhd8ed1ab_0    conda-forge
appdirs                   1.4.4              pyh9f0ad1d_0    conda-forge
brotli-python             1.0.9           py310hd8f1fbe_9    conda-forge
brotlipy                  0.7.0           py310h5764c6d_1005    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.19.1               hd590300_0    conda-forge
ca-certificates           2023.7.22            hbcca054_0    conda-forge
cachecontrol              0.13.1             pyhd8ed1ab_0    conda-forge
cachecontrol-with-filecache 0.13.1             pyhd8ed1ab_0    conda-forge
cachy                     0.3.0              pyhd8ed1ab_1    conda-forge
certifi                   2023.7.22          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1          py310h255011f_3    conda-forge
charset-normalizer        3.2.0              pyhd8ed1ab_0    conda-forge
click                     8.1.7           unix_pyh707e725_0    conda-forge
click-default-group       1.2.4              pyhd8ed1ab_0    conda-forge
clikit                    0.6.2              pyhd8ed1ab_2    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
conda                     23.1.0          py310hff52083_0    conda-forge
conda-lock                2.2.0              pyhd8ed1ab_0    conda-forge
conda-package-handling    2.0.2              pyh38be061_0    conda-forge
conda-package-streaming   0.8.0              pyhd8ed1ab_0    conda-forge
crashtest                 0.4.1              pyhd8ed1ab_0    conda-forge
cryptography              41.0.2          py310h75e40e8_0    conda-forge
dbus                      1.13.6               h5008d03_3    conda-forge
distlib                   0.3.7              pyhd8ed1ab_0    conda-forge
ensureconda               1.4.3              pyhd8ed1ab_0    conda-forge
expat                     2.5.0                hcb278e6_1    conda-forge
filelock                  3.12.3             pyhd8ed1ab_0    conda-forge
fmt                       9.1.0                h924138e_0    conda-forge
gettext                   0.21.1               h27087fc_0    conda-forge
gitdb                     4.0.10             pyhd8ed1ab_0    conda-forge
gitpython                 3.1.33             pyhd8ed1ab_0    conda-forge
html5lib                  1.1                pyh9f0ad1d_0    conda-forge
icu                       72.1                 hcb278e6_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
importlib-metadata        6.8.0              pyha770c72_0    conda-forge
importlib_metadata        6.8.0                hd8ed1ab_0    conda-forge
jaraco.classes            3.3.0              pyhd8ed1ab_0    conda-forge
jeepney                   0.8.0              pyhd8ed1ab_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
keyring                   24.2.0          py310hff52083_0    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.21.1               h659d440_0    conda-forge
ld_impl_linux-64          2.40                 h41732ed_0    conda-forge
libarchive                3.6.2                h039dbb9_1    conda-forge
libcurl                   8.2.1                hca28451_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libexpat                  2.5.0                hcb278e6_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 13.1.0               he5830b7_0    conda-forge
libglib                   2.76.4               hebfc3b9_0    conda-forge
libgomp                   13.1.0               he5830b7_0    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
libmamba                  1.5.0                h658169a_0    conda-forge
libmambapy                1.5.0           py310h8aae740_0    conda-forge
libnghttp2                1.52.0               h61bc06f_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libsolv                   0.7.24               hfc55251_1    conda-forge
libsqlite                 3.42.0               h2797004_0    conda-forge
libssh2                   1.11.0               h0841786_0    conda-forge
libstdcxx-ng              13.1.0               hfd8a6a1_0    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libxml2                   2.11.4               h0d562d8_0    conda-forge
libzlib                   1.2.13               hd590300_5    conda-forge
lz4-c                     1.9.4                hcb278e6_0    conda-forge
lzo                       2.10              h516909a_1000    conda-forge
mamba                     1.5.0           py310h51d5547_0    conda-forge
markupsafe                2.1.3           py310h2372a71_0    conda-forge
more-itertools            10.1.0             pyhd8ed1ab_0    conda-forge
msgpack-python            1.0.5           py310hdf3cbec_0    conda-forge
ncurses                   6.4                  hcb278e6_0    conda-forge
openssl                   3.1.2                hd590300_0    conda-forge
packaging                 23.1               pyhd8ed1ab_0    conda-forge
pastel                    0.2.1              pyhd8ed1ab_0    conda-forge
pcre2                     10.40                hc3806b6_0    conda-forge
pip                       23.1.2             pyhd8ed1ab_0    conda-forge
pkginfo                   1.9.6              pyhd8ed1ab_0    conda-forge
platformdirs              3.10.0             pyhd8ed1ab_0    conda-forge
pluggy                    1.2.0              pyhd8ed1ab_0    conda-forge
pybind11-abi              4                    hd8ed1ab_3    conda-forge
pycosat                   0.6.4           py310h5764c6d_1    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pydantic                  2.3.0              pyhd8ed1ab_0    conda-forge
pydantic-core             2.6.3           py310hcb5633a_0    conda-forge
pylev                     1.4.0              pyhd8ed1ab_0    conda-forge
pyopenssl                 23.2.0             pyhd8ed1ab_1    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
python                    3.10.12         hd12c33a_0_cpython    conda-forge
python_abi                3.10                    3_cp310    conda-forge
pyyaml                    6.0.1           py310h2372a71_0    conda-forge
readline                  8.2                  h8228510_1    conda-forge
reproc                    14.2.4               h0b41bf4_0    conda-forge
reproc-cpp                14.2.4               hcb278e6_0    conda-forge
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
ruamel.yaml               0.17.32         py310h2372a71_0    conda-forge
ruamel.yaml.clib          0.2.7           py310h1fa729e_1    conda-forge
secretstorage             3.3.3           py310hff52083_1    conda-forge
setuptools                68.0.0             pyhd8ed1ab_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
smmap                     3.0.5              pyh44b312d_0    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tomlkit                   0.12.1             pyha770c72_0    conda-forge
toolz                     0.12.0             pyhd8ed1ab_0    conda-forge
tqdm                      4.65.0             pyhd8ed1ab_1    conda-forge
typing-extensions         4.7.1                hd8ed1ab_0    conda-forge
typing_extensions         4.7.1              pyha770c72_0    conda-forge
tzdata                    2023c                h71feb2d_0    conda-forge
urllib3                   1.26.15            pyhd8ed1ab_0    conda-forge
virtualenv                20.24.4            pyhd8ed1ab_0    conda-forge
webencodings              0.5.1                      py_1    conda-forge
wheel                     0.40.0             pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
yaml-cpp                  0.7.0                h27087fc_2    conda-forge
zipp                      3.16.2             pyhd8ed1ab_0    conda-forge
zstandard                 0.19.0          py310h1275a96_2    conda-forge
zstd                      1.5.2                hfc55251_7    conda-forge

Additional Context

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