Bioconda CDN sync down

[dpryan79]

Checklist

• [X] I added a descriptive title
• [X] I searched open reports and couldn't find a duplicate

What happened?

The CDN sync for the bioconda seems to have been down for ~24 hours so far. For example, new packages under https://anaconda.org/bioconda/r-recetox-aplcms/files aren't available via conda install.

Conda Info

NA

Conda Config

NA

Conda list

NA

Additional Context

No response

[tnabtaf]

Reported, late on a Friday that was a holiday at Anaconda. We'll see.

[gmjen]

Hello, thank you for reporting this.

Other packages are uploading to the bioconda channel currently, but it seems bioconda doesn't have a necessary dependency for the package r-recetox-aplcms. The missing dependency is r-arrow>=7.0.0,<10.0.0, but the conda-forge channel does have it.

If you run this: conda install -c conda-forge 'r-arrow>=7.0.0,<10.0.0' then this: conda install -c bioconda r-recetox-aplcms

It should hopefully work.

Thanks

[dpryan79]

@gmjen I'm part of the bioconda core team, I'm well aware of how channels and dependencies work. The CDN sync has been down since May 11th.

[barabo]

The bioconda clone starts up every 20 minutes, runs, then shuts itself down (when working as intended). A few days ago the machine experienced a hardware failure while starting up that left it in a bad state, blocking further runs from starting. We had an issue like this a week ago with the pytorch channel, and had not yet rolled out the fix.

I'm escalating the patch and will deploy it once the PR has been approved and merged.

In the meantime, I restarted the bioconda clone and it is catching up now. It should finish within the next 20 minutes.

[johanneskoester]

Thanks a lot!

[jezdez]

This seems to have been fixed, thanks @barabo!

[dpryan79]

Thanks @barabo and @jezdez !